RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CORO6Q6QEF8 472 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 DCXRQ7Z4W1 244 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 NUP37Q8NFH4 326 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 SPRYD4Q8WW59 207 aaPredicted RBP13.42□□□□□ -0.26
SS18-216ENST00000580751 AKAP1Q92667 903 aaKnown RBP eCLIP13.42□□□□□ -0.26
SS18-216ENST00000580751 FBXW5Q969U6 566 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 OR5M11Q96RB7 305 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 TBX5Q99593 518 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 PLEKHF2Q9H8W4 249 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 DDX28Q9NUL7 540 aaKnown RBP13.42□□□□□ -0.26
SS18-216ENST00000580751 ATP23Q9Y6H3 246 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 LRBAP50851 2863 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 C5orf49A4QMS7 147 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 OR6C6A6NF89 314 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 ACOD1A6NK06 481 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 ZNF878C9JN71 531 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 J3QLW9 94 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 CCRL2O00421 344 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 SYNGR3O43761 229 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 ABHD16AO95870 558 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 CPEP16870 476 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 ZNF19P17023 458 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 GALP22466 123 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 PSMA1P25786 263 aaKnown RBP13.41□□□□□ -0.26
SS18-216ENST00000580751 OPRL1P41146 370 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 RIDAP52758 137 aaKnown RBP13.41□□□□□ -0.26
SS18-216ENST00000580751 HCCSP53701 268 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 TRAM1Q15629 374 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 TIMM50Q3ZCQ8 353 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 CCDC92Q53HC0 331 aaPredicted RBP13.41□□□□□ -0.26
SS18-216ENST00000580751 OR2G6Q5TZ20 316 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 RPL22L1Q6P5R6 122 aaKnown RBP13.41□□□□□ -0.26
SS18-216ENST00000580751 UNQ6126/PRO20091Q6UXV3 157 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 C20orf204Q6ZNR8 217 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 CFAP77Q6ZQR2 320 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 SSX6Q7RTT6 188 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 KRT77Q7Z794 578 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 OR1F12Q8NHA8 337 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 ZNF420Q8TAQ5 688 aaPredicted RBP13.41□□□□□ -0.26
SS18-216ENST00000580751 GATAD2BQ8WXI9 593 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 UFD1Q92890 307 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 POM121L2Q96KW2 1035 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 C4orf36Q96KX1 117 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 COQ7Q99807 217 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 UBTD1Q9HAC8 227 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 CISD1Q9NZ45 108 aaKnown RBP13.41□□□□□ -0.26
SS18-216ENST00000580751 EDARQ9UNE0 448 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 KLHDC2Q9Y2U9 406 aa13.41□□□□□ -0.26
SS18-216ENST00000580751 CACNA1DQ01668 2161 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 LOC100509620A0A075B734 347 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 OGG1O15527 345 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 CCL2P13500 99 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 CCNOP22674 350 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 NR4A1P22736 598 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 PCSK6P29122 969 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 RPS27P42677 84 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 RGS6P49758 472 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 CCR9P51686 369 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 OR12D2P58182 307 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 KRTAP10-9P60411 292 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 RPS23P62266 143 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 GRB2P62993 217 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 SNTB2Q13425 540 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 LIPNQ5VXI9 398 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 ARL9Q6T311 187 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 GDPGP1Q6ZNW5 385 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 ZNF611Q8N823 705 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 LILRB1Q8NHL6 650 aaPredicted RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 RPS4Y2Q8TD47 263 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 SLAMF6Q96DU3 332 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 PELI1Q96FA3 418 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 MAP6Q96JE9 813 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 OPALINQ96PE5 141 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 ATF6BQ99941 703 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 DHRS9Q9BPW9 319 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 ISG20L2Q9H9L3 353 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 CA10Q9NS85 328 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 FAIMQ9NVQ4 179 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 EIF3KQ9UBQ5 218 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 MRM2Q9UI43 246 aaKnown RBP13.4□□□□□ -0.26
SS18-216ENST00000580751 GNG8Q9UK08 70 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 IKZF2Q9UKS7 526 aa13.4□□□□□ -0.26
SS18-216ENST00000580751 DPPA5A6NC42 116 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 E7EQL1 145 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 PLPP2O43688 288 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 GPRIN2O60269 458 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 H2BFMP0C1H6 154 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 HSMCR30P0CW71 290 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 PSKH1P11801 424 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 MMP16P51512 607 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 TMBIM6P55061 237 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 NKX6-1P78426 367 aaPredicted RBP13.39□□□□□ -0.27
SS18-216ENST00000580751 HGFACQ04756 655 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 SATL1Q86VE3 508 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 ANKRD13BQ86YJ7 626 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 KLBQ86Z14 1044 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 PAQR4Q8N4S7 273 aaPredicted RBP13.39□□□□□ -0.27
SS18-216ENST00000580751 MS4A15Q8N5U1 240 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 RFLNBQ8N5W9 214 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms