RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CEACAM18A8MTB9 384 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 TRAPPC2LH3BP13 241 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 MLNRO43193 412 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 GMDSO60547 372 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 CFPP27918 469 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 TRAP1Q12931 704 aaKnown RBP12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 GK2Q14410 553 aaPredicted RBP12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 HLXQ14774 488 aaPredicted RBP12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 ZNF404Q494X3 552 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 ZNF362Q5T0B9 420 aaPredicted RBP12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 OR2T2Q6IF00 324 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 DRAM2Q6UX65 266 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 CD300LDQ6UXZ3 194 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 RNF148Q8N7C7 305 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 ZDHHC22Q8N966 263 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 SPERTQ8NA61 448 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 ATG16L2Q8NAA4 619 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 OR4K13Q8NH42 304 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 SPTSSAQ969W0 71 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 PITX2Q99697 317 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 TRIM36Q9NQ86 728 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 MRPL22Q9NWU5 206 aaKnown RBP12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 DCAF16Q9NXF7 216 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 OR5V1Q9UGF6 321 aa12.16□□□□□ -0.46
SMARCE1-216ENST00000580419 PHYHO14832 338 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 DDOSTP39656 456 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 NPY4RP50391 375 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 ERFP50548 548 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 SLC25A1P53007 311 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 RAD23AP54725 363 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 KCNJ8Q15842 424 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 MEP1BQ16820 701 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 ARMCX4Q5H9R4 360 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 RBMS3Q6XE24 437 aaKnown RBP12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 CFAP77Q6ZQR2 320 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 DCDC5Q6ZRR9 648 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 NLRC3Q7RTR2 1065 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 OR52E2Q8NGJ4 325 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 SGMS2Q8NHU3 365 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 GCDHQ92947 438 aaPredicted RBP12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 ITFG2Q969R8 447 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 UPRTQ96BW1 309 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 NEIL1Q96FI4 390 aaPredicted RBP12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 DMRTB1Q96MA1 342 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 SSBP3Q9BWW4 388 aaPredicted RBP12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 DGCR6LQ9BY27 220 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 PRDM13Q9H4Q3 707 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 MMP26Q9NRE1 261 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 PTTG3PQ9NZH4 202 aa12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 MRPL15Q9P015 296 aaKnown RBP12.15□□□□□ -0.46
SMARCE1-216ENST00000580419 KIR2DS1A0A191URI9 304 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 M0R135 149 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 NDUFA2O43678 99 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF823P16415 610 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 PRTN3P24158 256 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 UBA52P62987 128 aaKnown RBP12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 ACTG1P63261 375 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 MZT1Q08AG7 82 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 LCN8Q6JVE9 175 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 CORO6Q6QEF8 472 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 BTNL3Q6UXE8 466 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 PGAP1Q75T13 922 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 DEFB107AQ8IZN7 70 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF799Q96GE5 643 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 MAP6Q96JE9 813 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 SLC6A7Q99884 636 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 BTBD10Q9BSF8 475 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 NMNAT2Q9BZQ4 307 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 ARL8BQ9NVJ2 186 aa12.14□□□□□ -0.47
SMARCE1-216ENST00000580419 IGHV2-70DA0A0C4DH43 119 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 ARRDC5A6NEK1 342 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 F5H5K5 113 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 TNFRSF11BO00300 401 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 PLATP00750 562 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 APOC1P02654 83 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 LCATP04180 440 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 LIPFP07098 398 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 HKR1P10072 659 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 IRF2P14316 349 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 CD80P33681 288 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 PSMB10P40306 273 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 FOXL1Q12952 345 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 MAB21L1Q13394 359 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 TRIM25Q14258 630 aaKnown RBP12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 KLF17Q5JT82 389 aaPredicted RBP12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 OR5AS1Q8N127 324 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 SDR9C7Q8NEX9 313 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 OR10AD1Q8NGE0 317 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 OR11L1Q8NGX0 322 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 RAB40AQ8WXH6 277 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 SPSB4Q96A44 273 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 TMEM246Q9BRR3 403 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 FAM107BQ9H098 131 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 TOR3AQ9H497 397 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 SP140LQ9H930 580 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 ESM1Q9NQ30 184 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 PPIAL4AQ9Y536 164 aa12.13□□□□□ -0.47
SMARCE1-216ENST00000580419 TCRBV5S2A0A599 114 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 CD300LBA8K4G0 201 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms