RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 IL19Q9UHD0 177 aa20.23■□□□□ 0.83
SHMT1-206ENST00000579558 IQCF6A8MYZ5 107 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 SELEP16581 610 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 DVL1P1P54792 670 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-206ENST00000579558 TAF13Q15543 124 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 C1orf146Q5VVC0 180 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 PEG10Q86TG7 708 aaKnown RBP20.22■□□□□ 0.83
SHMT1-206ENST00000579558 GLCCI1Q86VQ1 547 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 BHLHE23Q8NDY6 225 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 OR13G1Q8NGZ3 307 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 UTP4Q969X6 686 aaKnown RBP20.22■□□□□ 0.83
SHMT1-206ENST00000579558 NRBF2Q96F24 287 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 OR51V1Q9H2C8 321 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 ZNF665Q9H7R5 613 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 LPAR2Q9HBW0 351 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 CENPMQ9NSP4 180 aa20.22■□□□□ 0.83
SHMT1-206ENST00000579558 PRR23D1E9PI22 279 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 GLCEO94923 617 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 HMGN1P05114 100 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 PRR23D2P0DMB1 279 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 SRD5A1P18405 259 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 GSTT1P30711 240 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 OTX1P32242 354 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 PRSS12P56730 875 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 CDK5Q00535 292 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 HNRNPA0Q13151 305 aaKnown RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 GK2Q14410 553 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 DRAM2Q6UX65 266 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 ERI1Q8IV48 349 aaKnown RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 OR10AD1Q8NGE0 317 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 OR6N2Q8NGY6 317 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 DNAJC9Q8WXX5 260 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 RAB39BQ96DA2 213 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 OR2V2Q96R30 315 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 INTS14Q96SY0 518 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 TMEM106BQ9NUM4 274 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 TMEFF2Q9UIK5 374 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-206ENST00000579558 DYSFO75923 2080 aa20.21■□□□□ 0.83
SHMT1-206ENST00000579558 ISPDA4D126 451 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 ZNF878C9JN71 531 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 MSMBP08118 114 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 PRKXP51817 358 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 EIF2B1Q14232 305 aaKnown RBP20.2■□□□□ 0.82
SHMT1-206ENST00000579558 PLBD1Q6P4A8 553 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 PGAP1Q75T13 922 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 SPATC1Q76KD6 591 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 MRPL21Q7Z2W9 205 aaKnown RBP20.2■□□□□ 0.82
SHMT1-206ENST00000579558 ZNF283Q8N7M2 679 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 OR51F2Q8NH61 342 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 OR5K1Q8NHB7 308 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 ST7LQ8TDW4 575 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 PLEKHA8Q96JA3 519 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 KCNJ15Q99712 375 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 GAL3ST1Q99999 423 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 SLC30A2Q9BRI3 323 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 TEX12Q9BXU0 123 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 PAPOLBQ9NRJ5 636 aaKnown RBP20.2■□□□□ 0.82
SHMT1-206ENST00000579558 DCAF16Q9NXF7 216 aa20.2■□□□□ 0.82
SHMT1-206ENST00000579558 PCMT1P22061 227 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 SNAI3Q3KNW1 292 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 TMEM236Q5W0B7 351 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 DPY19L4Q7Z388 723 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 TMEM186Q96B77 213 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 ZMYND19Q96E35 227 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-206ENST00000579558 SLC25A19Q9HC21 320 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 TMEM100Q9NV29 134 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 PPP1R3CQ9UQK1 317 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 NPTNQ9Y639 398 aa20.19■□□□□ 0.82
SHMT1-206ENST00000579558 H0YL77 283 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 IGHV2-5P01817 119 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 ANPEPP15144 967 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 GRB2P62993 217 aaKnown RBP20.18■□□□□ 0.82
SHMT1-206ENST00000579558 ATP6AP1Q15904 470 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 FAHD1Q6P587 224 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 ZNF771Q7L3S4 317 aaPredicted RBP20.18■□□□□ 0.82
SHMT1-206ENST00000579558 CPOQ8IVL8 374 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 MEGF10Q96KG7 1140 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 MARCH7Q9H992 704 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 HIF1ANQ9NWT6 349 aa20.18■□□□□ 0.82
SHMT1-206ENST00000579558 MLNRO43193 412 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 SLC2A1P11166 492 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 RBMXP38159 391 aaKnown RBP20.17■□□□□ 0.82
SHMT1-206ENST00000579558 SLC15A1P46059 708 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 SRP9P49458 86 aaKnown RBP20.17■□□□□ 0.82
SHMT1-206ENST00000579558 DAPP51397 102 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 KLHL12Q53G59 568 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 SHFQ7M4L6 423 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 TIGD4Q8IY51 512 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 OR2AE1Q8NHA4 323 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 SPRYD4Q8WW59 207 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-206ENST00000579558 ABHD6Q9BV23 337 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 UBAP1Q9NZ09 502 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 AP4S1Q9Y587 144 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 N6AMT1Q9Y5N5 214 aa20.17■□□□□ 0.82
SHMT1-206ENST00000579558 C5orf63A6NC05 138 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 F5H5P2 479 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 PRODHO43272 600 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 CIB2O75838 187 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 IGHV2-70P01814 119 aa20.16■□□□□ 0.82
SHMT1-206ENST00000579558 SBK2P0C263 348 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms