RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ACMSDQ8TDX5 336 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 H1FXQ92522 213 aaKnown RBP12.84□□□□□ -0.35
VPS53-218ENST00000575207 TMEM19Q96HH6 336 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 RAB17Q9H0T7 212 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 PLA2G2EQ9NZK7 142 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 IGHV3OR15-7A0A075B7D8 119 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 IGLV1-36A0A0B4J1U3 117 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 A0A1W2PRG6 482 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 NDUFB3O43676 98 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 GLCEO94923 617 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 CH25HO95992 272 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 GUCA1AP43080 201 aaPredicted RBP12.83□□□□□ -0.36
VPS53-218ENST00000575207 TGM4P49221 684 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 CEBPDP49716 269 aaPredicted RBP12.83□□□□□ -0.36
VPS53-218ENST00000575207 NCALDP61601 193 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 SLC7A5Q01650 507 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 CD47Q08722 323 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 ZNF74Q16587 644 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 WDR38Q5JTN6 314 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 HHATQ5VTY9 493 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 ARMC8Q8IUR7 673 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 OSR2Q8N2R0 312 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 PANX1Q96RD7 426 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 SPATA25Q9BR10 227 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 TMEM27Q9HBJ8 222 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 ZFP57Q9NU63 452 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 ASIC5Q9NY37 505 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 LYVE1Q9Y5Y7 322 aa12.83□□□□□ -0.36
VPS53-218ENST00000575207 DNAH2Q9P225 4427 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 SGCEO43556 437 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 HIST1H2ABP04908 130 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 CHRNGP07510 517 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 SNRNP70P08621 437 aaKnown RBP12.82□□□□□ -0.36
VPS53-218ENST00000575207 NR2C1P13056 603 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 CPA3P15088 417 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 MUC1P15941 1255 aaPredicted RBP12.82□□□□□ -0.36
VPS53-218ENST00000575207 DAP3P51398 398 aaKnown RBP12.82□□□□□ -0.36
VPS53-218ENST00000575207 DYNLT3P51808 116 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 CDH12P55289 794 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 LGALS4P56470 323 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 RAB25P57735 213 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 EMX2Q04743 252 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 SPANXN4Q5MJ08 99 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 SLC25A47Q6Q0C1 308 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 ZNF621Q6ZSS3 439 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 FOXL2NBQ6ZUU3 175 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 HIST3H2AQ7L7L0 130 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 LHFPL4Q7Z7J7 247 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 EGFL6Q8IUX8 553 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 AGR3Q8TD06 166 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 ACOT11Q8WXI4 607 aaPredicted RBP12.82□□□□□ -0.36
VPS53-218ENST00000575207 SLC7A6Q92536 515 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 HIST1H2ACQ93077 130 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 TESCQ96BS2 214 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 DUS3LQ96G46 650 aaKnown RBP12.82□□□□□ -0.36
VPS53-218ENST00000575207 RAX2Q96IS3 184 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 DUX3Q96PT4 197 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 WACQ9BTA9 647 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 C1orf123Q9NWV4 160 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 VNN3Q9NY84 501 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 STX18Q9P2W9 335 aaKnown RBP12.82□□□□□ -0.36
VPS53-218ENST00000575207 BTNL2Q9UIR0 455 aa12.82□□□□□ -0.36
VPS53-218ENST00000575207 A0A1W2PQ09 198 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 NUDT19A8MXV4 375 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 H0YAE9 185 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 CCL24O00175 119 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 FMO6PO60774 539 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 KRT75O95678 551 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 MSR1P21757 451 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 MTNR1BP49286 362 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 SCRN3Q0VDG4 424 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 IKZF1Q13422 519 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 OR1Q1Q15612 314 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 MICBQ29980 383 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 LRRC10Q5BKY1 277 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 SWT1Q5T5J6 900 aaKnown RBP12.81□□□□□ -0.36
VPS53-218ENST00000575207 KLHL30-AS1Q8NEE0 82 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 SLCO1B3Q9NPD5 702 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 MRPL15Q9P015 296 aaKnown RBP12.81□□□□□ -0.36
VPS53-218ENST00000575207 ZNF229Q9UJW7 825 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 AURKCQ9UQB9 309 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 SAR1BQ9Y6B6 198 aa12.81□□□□□ -0.36
VPS53-218ENST00000575207 TMEM247A6NEH6 219 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 BLOC1S5-TXNDC5H3BN57 136 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 PLIN3O60664 434 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 IFNA6P05013 189 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 LPLP06858 475 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 AMY2BP19961 511 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 AZGP1P25311 298 aaKnown RBP12.8□□□□□ -0.36
VPS53-218ENST00000575207 CDKN2CP42773 168 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 INSL3P51460 131 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 MVDP53602 400 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 UGT2B15P54855 530 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 DSTNP60981 165 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 OR8G1Q15617 311 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 DPY19L1Q2PZI1 675 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 CCDC153Q494R4 210 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 NANOGNBQ7Z5D8 188 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 CCDC63Q8NA47 563 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 HDAC2Q92769 488 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms