RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SPATC1Q76KD6 591 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 CELF2-AS1Q8N7Q2 184 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 CCDC197Q8NCU1 140 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 Q8TCH9 128 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 ERGIC1Q969X5 290 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 NDUFAF4Q9P032 175 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 RPS6KA6Q9UK32 745 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 B9D1Q9UPM9 204 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 AURKCQ9UQB9 309 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 TRRAPQ9Y4A5 3859 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 TRBV4-1A0A0J9YWV2 114 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 UNC119BA6NIH7 251 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 SRRM5B3KS81 715 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 PHYHO14832 338 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 ACSM4P0C7M7 580 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 RHCEP18577 417 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 OMGP23515 440 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 RAD23AP54725 363 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 BPIFB3P59826 476 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 DEFA6Q01524 100 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 GK2Q14410 553 aaPredicted RBP17.55■□□□□ 0.4
VPS53-216ENST00000574029 SEC23BQ15437 767 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 FGD3Q5JSP0 725 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 BRD3OSQ6XYD6 125 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.55■□□□□ 0.4
VPS53-216ENST00000574029 SLC26A10Q8NG04 563 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 FAM162AQ96A26 154 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 CDADC1Q9BWV3 514 aa17.55■□□□□ 0.4
VPS53-216ENST00000574029 FAM32AQ9Y421 112 aaKnown RBP17.55■□□□□ 0.4
VPS53-216ENST00000574029 PPP1R3DO95685 299 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 IRF2P14316 349 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 NCK1P16333 377 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 PSMB10P40306 273 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 CD200P41217 278 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 PRSS12P56730 875 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 FGF12P61328 243 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 SLC18B1Q6NT16 456 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 SMARCD3Q6STE5 483 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 CFAP77Q6ZQR2 320 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 OR6V1Q8N148 313 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 DHRS1Q96LJ7 313 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 ERMAPQ96PL5 475 aaPredicted RBP17.54■□□□□ 0.4
VPS53-216ENST00000574029 FUZQ9BT04 418 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 SPAG4Q9NPE6 437 aa17.54■□□□□ 0.4
VPS53-216ENST00000574029 KRCC1Q9NPI7 259 aaPredicted RBP17.54■□□□□ 0.4
VPS53-216ENST00000574029 A0A1B0GUS0 222 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 C22orf46C9J442 243 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 MNAT1P51948 309 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 ECH1Q13011 328 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 OCLNQ16625 522 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 CLEC12AQ5QGZ9 265 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 Q6YL49 198 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 OR11L1Q8NGX0 322 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 ZDHHC16Q969W1 377 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 C7orf34Q96L11 122 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 SRA1Q9HD15 236 aaKnown RBP17.53■□□□□ 0.4
VPS53-216ENST00000574029 NOX4Q9NPH5 578 aa17.53■□□□□ 0.4
VPS53-216ENST00000574029 FAM181BA6NEQ2 426 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 F5H5K5 113 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 ENSAO43768 121 aaKnown RBP17.52■□□□□ 0.4
VPS53-216ENST00000574029 FAM20BO75063 409 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 NPY4RP50391 375 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 RFX4Q33E94 735 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 ZNF362Q5T0B9 420 aaPredicted RBP17.52■□□□□ 0.4
VPS53-216ENST00000574029 GPR157Q5UAW9 335 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 NAA40Q86UY6 237 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 ZBTB46Q86UZ6 589 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 LINC00346Q8IVM7 164 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 PGAM4Q8N0Y7 254 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 C19orf18Q8NEA5 215 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 NMNAT3Q96T66 252 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 PITX2Q99697 317 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 ATF6BQ99941 703 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 KCTD14Q9BQ13 255 aaPredicted RBP17.52■□□□□ 0.4
VPS53-216ENST00000574029 PNRC2Q9NPJ4 139 aaKnown RBP17.52■□□□□ 0.4
VPS53-216ENST00000574029 TMCC3Q9ULS5 477 aa17.52■□□□□ 0.4
VPS53-216ENST00000574029 ARPC3O15145 178 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 RENP00797 406 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 DBPQ10586 325 aaPredicted RBP17.51■□□□□ 0.39
VPS53-216ENST00000574029 TRAP1Q12931 704 aaKnown RBP17.51■□□□□ 0.39
VPS53-216ENST00000574029 MALLQ13021 153 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 MPPED2Q15777 294 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 SLC36A3Q495N2 470 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 PRAMEF6Q5VXH4 476 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 PGAP1Q75T13 922 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 OR52J3Q8NH60 311 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 BCAS4Q8TDM0 211 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 WFDC12Q8WWY7 111 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 SLCO4A1Q96BD0 722 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 NSL1Q96IY1 281 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 BEX1Q9HBH7 125 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 NDE1Q9NXR1 346 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 ADA2Q9NZK5 511 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 CYB5R1Q9UHQ9 305 aa17.51■□□□□ 0.39
VPS53-216ENST00000574029 DIRAS1O95057 198 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 PTBP3O95758 552 aaKnown RBP17.5■□□□□ 0.39
VPS53-216ENST00000574029 KNG1P01042 644 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 LCATP04180 440 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 HIST1H1CP16403 213 aaKnown RBP17.5■□□□□ 0.39
VPS53-216ENST00000574029 SLC6A6P31641 620 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms