RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RAB39BQ96DA2 213 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 CMBLQ96DG6 245 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 ZNF582Q96NG8 517 aaPredicted RBP6.89□□□□□ -1.31
VPS53-214ENST00000572607 FEVQ99581 238 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 NIPSNAP1Q9BPW8 284 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 HCAR1Q9BXC0 346 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 MSL2Q9HCI7 577 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 PTTG3PQ9NZH4 202 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 DNAJB9Q9UBS3 223 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 CYB5R1Q9UHQ9 305 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 POMPQ9Y244 141 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 STARD10Q9Y365 291 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 YLPM1P49750 1951 aaKnown RBP6.89□□□□□ -1.31
VPS53-214ENST00000572607 TCRBV3S1A0A5B6 114 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 ISPDA4D126 451 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 B4DSR2 109 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 GSC2O15499 205 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 DEAF1O75398 565 aaPredicted RBP6.88□□□□□ -1.31
VPS53-214ENST00000572607 RP2O75695 350 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 CIB2O75838 187 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 LCATP04180 440 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 CD55P08174 381 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 ADH4P08319 380 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 FAM157CP0CG43 387 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 ANXA8P13928 327 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 ANPEPP15144 967 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 SPI1P17947 270 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 GGT2P36268 569 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 SLC6A9P48067 706 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 ENTPD1P49961 510 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 MVKQ03426 396 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 BNIP1Q12981 228 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 AVPI1Q5T686 147 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 FBXW12Q6X9E4 464 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 CFAP77Q6ZQR2 320 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 OR5AS1Q8N127 324 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 OR51L1Q8NGJ5 315 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 OR51F2Q8NH61 342 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 CLDND2Q8NHS1 167 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 DNAJC9Q8WXX5 260 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 HAVCR1Q96D42 359 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 PLEKHA8Q96JA3 519 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 MEGF10Q96KG7 1140 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 COPS4Q9BT78 406 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 CADM1Q9BY67 442 aaKnown RBP6.88□□□□□ -1.31
VPS53-214ENST00000572607 PRRG3Q9BZD7 231 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 MMADHCQ9H3L0 296 aaPredicted RBP6.88□□□□□ -1.31
VPS53-214ENST00000572607 POFUT1Q9H488 388 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 CMC2Q9NRP2 79 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 MRPL22Q9NWU5 206 aaKnown RBP6.88□□□□□ -1.31
VPS53-214ENST00000572607 ARFGEF3Q5TH69 2177 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 SVEP1Q4LDE5 3571 aa6.88□□□□□ -1.31
VPS53-214ENST00000572607 ZNF878C9JN71 531 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 PRR23D1E9PI22 279 aaPredicted RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 M0R135 149 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 APOC1P02654 83 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 HMGN1P05114 100 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 GYPBP06028 91 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 ACSM4P0C7M7 580 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 PRR23D2P0DMB1 279 aaPredicted RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 OSMP13725 252 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 SRD5A1P18405 259 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 IGFBP5P24593 272 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 HSD11B1P28845 292 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 IL2RGP31785 369 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 SRP14P37108 136 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 SLC15A1P46059 708 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 SRP9P49458 86 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 ERFP50548 548 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 RAD23AP54725 363 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 DVL1P1P54792 670 aaPredicted RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 CDK5R2Q13319 367 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 GINS1Q14691 196 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 CR1LQ2VPA4 569 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 FAM120AOSQ5T036 256 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 C1orf146Q5VVC0 180 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 OR2T2Q6IF00 324 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 SHQ1Q6PI26 577 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 PGAP1Q75T13 922 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 MRPL21Q7Z2W9 205 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 DCXRQ7Z4W1 244 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 TEX29Q8N6K0 151 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 IQCF1Q8N6M8 205 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 PAPD5Q8NDF8 572 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 OR8G5Q8NG78 346 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 OR13G1Q8NGZ3 307 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 ST7LQ8TDW4 575 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 SPRYD4Q8WW59 207 aaPredicted RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 SLAMF6Q96DU3 332 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 NRBF2Q96F24 287 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 ZNF799Q96GE5 643 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 INTS14Q96SY0 518 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 DDOQ99489 341 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 GAL3ST1Q99999 423 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 RBM4Q9BWF3 364 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 C1QTNF5Q9BXJ0 243 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 OR51V1Q9H2C8 321 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 TOR3AQ9H497 397 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 ZNF665Q9H7R5 613 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 SP140LQ9H930 580 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms