RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CDK6Q00534 326 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 FGFRL1Q8N441 504 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 PRSS22Q9GZN4 317 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 METTL8Q9H825 291 aaKnown RBP14.62□□□□□ -0.07
CLK3-227ENST00000570296 EMC7Q9NPA0 242 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 SLC7A7Q9UM01 511 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 NOP16Q9Y3C1 178 aaKnown RBP14.62□□□□□ -0.07
CLK3-227ENST00000570296 CPSF4LA6NMK7 179 aaKnown RBP14.61□□□□□ -0.07
CLK3-227ENST00000570296 M0R3H8 397 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 CLIC1O00299 241 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 SERPINB7O75635 380 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 ALDOBP05062 364 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 BPGMP07738 259 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 ENTPD8Q5MY95 495 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 GCNT6Q5T4J0 391 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 TEX36Q5VZQ5 186 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 ARMC8Q8IUR7 673 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 OR1F12Q8NHA8 337 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 MOSPD2Q8NHP6 518 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 PIFOQ8TCI5 191 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 LRRC8CQ8TDW0 803 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 ADAMTS16Q8TE57 1224 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 CDCA4Q9BXL8 241 aa14.61□□□□□ -0.07
CLK3-227ENST00000570296 MEPEQ9NQ76 525 aaPredicted RBP14.61□□□□□ -0.07
CLK3-227ENST00000570296 SF3B6Q9Y3B4 125 aaKnown RBP14.61□□□□□ -0.07
CLK3-227ENST00000570296 LSM4Q9Y4Z0 139 aaKnown RBP14.61□□□□□ -0.07
CLK3-227ENST00000570296 TSSC4Q9Y5U2 329 aaPredicted RBP14.61□□□□□ -0.07
CLK3-227ENST00000570296 TRAPPC13A5PLN9 417 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 M0R1W7 72 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 POLR3GO15318 223 aaPredicted RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 ITM2AO43736 263 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 OR7A10O76100 309 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 FAM153BP0C7A2 387 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 FUT1P19526 365 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 RPL14P50914 215 aaKnown RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 DGCR2P98153 550 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 AQP6Q13520 282 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 CNN3Q15417 329 aaKnown RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 C6orf10Q5SRN2 563 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 KIRREL3Q8IZU9 778 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 LINC00482Q8N8I6 264 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 OR5AU1Q8NGC0 362 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 TCP10LQ8TDR4 215 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 EPS8L3Q8TE67 593 aaKnown RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 AENQ8WTP8 325 aaKnown RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 OR5M11Q96RB7 305 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 MCRIP2Q9BUT9 160 aaKnown RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 PRPF19Q9UMS4 504 aaKnown RBP14.6□□□□□ -0.07
CLK3-227ENST00000570296 RAP2CQ9Y3L5 183 aa14.6□□□□□ -0.07
CLK3-227ENST00000570296 H0YHG0 523 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 SLC22A3O75751 556 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 MT-ND1P03886 318 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 SERPINE1P05121 402 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 DBHP09172 617 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 RPL27P61353 136 aaKnown RBP14.59□□□□□ -0.07
CLK3-227ENST00000570296 TOP3AQ13472 1001 aaPredicted RBP14.59□□□□□ -0.07
CLK3-227ENST00000570296 OR8G1Q15617 311 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 NPTX1Q15818 432 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 UNQ9370/PRO34162Q6UXP9 181 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 GCSAMQ8N6F7 178 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 OR6T1Q8NGN1 323 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 ASCL2Q99929 193 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 SLC22A4Q9H015 551 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 MUC13Q9H3R2 512 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 C1orf123Q9NWV4 160 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 AURKCQ9UQB9 309 aa14.59□□□□□ -0.07
CLK3-227ENST00000570296 A0A1B0GW55 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 TCRBV4S1A1TA0A5B7 111 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 LHBP01229 141 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 IGF2P01344 180 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L2P0CJ85 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L3P0CJ86 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L4P0CJ87 422 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L5P0CJ88 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L6P0CJ89 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L7P0CJ90 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 VDAC2P45880 294 aaPredicted RBP14.58□□□□□ -0.08
CLK3-227ENST00000570296 ARSJQ5FYB0 599 aaPredicted RBP14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4L9Q6RFH8 374 aaPredicted RBP14.58□□□□□ -0.08
CLK3-227ENST00000570296 CCDC121Q6ZUS5 278 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 SLC36A1Q7Z2H8 476 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 LIPHQ8WWY8 451 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 ACOT11Q8WXI4 607 aaPredicted RBP14.58□□□□□ -0.08
CLK3-227ENST00000570296 WDR76Q9H967 626 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 DUX4Q9UBX2 424 aa14.58□□□□□ -0.08
CLK3-227ENST00000570296 TRBV23-1A0A0A0MS06 115 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 F2RL2O00254 374 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 NDUFB3O43676 98 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 SYNGR1O43759 233 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 RAMP3O60896 148 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 ABCE1P61221 599 aaKnown RBP14.57□□□□□ -0.08
CLK3-227ENST00000570296 POU4F2Q12837 409 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 MICBQ29980 383 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 TCTEX1D4Q5JR98 221 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 HCP5Q6MZN7 132 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 SGTBQ96EQ0 304 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 CCL13Q99616 98 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 PRSS27Q9BQR3 290 aa14.57□□□□□ -0.08
CLK3-227ENST00000570296 PAIP1Q9H074 479 aaKnown RBP14.57□□□□□ -0.08
CLK3-227ENST00000570296 IGHV3OR15-7A0A075B7D8 119 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms