RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 RANBP3Q9H6Z4 567 aaPredicted RBP9.57□□□□□ -0.88
CLK3-222ENST00000568232 RMND5AQ9H871 391 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 ZNF702PQ9H963 129 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 PPCSQ9HAB8 311 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 POLE4Q9NR33 117 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 IGHV3OR15-7A0A075B7D8 119 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 A0A1B0GWJ7 208 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 OOEPA6NGQ2 149 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 IQCF6A8MYZ5 107 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 E9PQ18 207 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 FBP2O00757 339 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 OR7A10O76100 309 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 ECDO95905 644 aaPredicted RBP9.56□□□□□ -0.88
CLK3-222ENST00000568232 SERPINE1P05121 402 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 HOXB9P17482 250 aaPredicted RBP9.56□□□□□ -0.88
CLK3-222ENST00000568232 BGNP21810 368 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 CD200P41217 278 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 SLC1A6P48664 564 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 GABPB1Q06547 395 aaPredicted RBP9.56□□□□□ -0.88
CLK3-222ENST00000568232 EGFEM1PQ0D2K5 195 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 SCRN3Q0VDG4 424 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 SCARB2Q14108 478 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 BEND6Q5SZJ8 279 aaPredicted RBP9.56□□□□□ -0.88
CLK3-222ENST00000568232 RNF144BQ7Z419 303 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 FAM90A1Q86YD7 464 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 PCYOX1LQ8NBM8 494 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 LY6G5BQ8NDX9 201 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 GPR32P1Q8NGA4 272 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 OR9I1Q8NGQ6 314 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 SLC7A13Q8TCU3 470 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 AENQ8WTP8 325 aaKnown RBP9.56□□□□□ -0.88
CLK3-222ENST00000568232 TNFRSF14Q92956 283 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 ERGIC1Q969X5 290 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 RASD2Q96D21 266 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 ALG12Q9BV10 488 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 TXNIPQ9H3M7 391 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 MED4Q9NPJ6 270 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 SLC25A37Q9NYZ2 338 aa9.56□□□□□ -0.88
CLK3-222ENST00000568232 STX18Q9P2W9 335 aaKnown RBP9.56□□□□□ -0.88
CLK3-222ENST00000568232 TRAV38-1A0A0B4J264 116 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 LCE6AA0A183 80 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 TRAPPC13A5PLN9 417 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 GMNCA6NCL1 334 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 H7C1C5 153 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 NHLRC4P0CG21 123 aaPredicted RBP9.55□□□□□ -0.88
CLK3-222ENST00000568232 LCN6P62502 163 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 SLC35A2P78381 396 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 INTS11Q5TA45 600 aaKnown RBP9.55□□□□□ -0.88
CLK3-222ENST00000568232 MSRB3Q8IXL7 192 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 CELF2-AS1Q8N7Q2 184 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 OR51G2Q8NGK0 314 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 OR5L1Q8NGL2 311 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 AJUBAQ96IF1 538 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 DDOQ99489 341 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 NPFFR1Q9GZQ6 430 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 SLAMF8Q9P0V8 285 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 STAB2Q8WWQ8 2551 aa9.55□□□□□ -0.88
CLK3-222ENST00000568232 OR6C6A6NF89 314 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 NDUFA2O43678 99 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 SERPINB7O75635 380 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 MT-ND1P03886 318 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 TSPAN19P0C672 248 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 PF4V1P10720 104 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 NR2C1P13056 603 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 BMXP51813 675 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 POLR2JP52435 117 aaKnown RBP9.54□□□□□ -0.88
CLK3-222ENST00000568232 RPL27P61353 136 aaKnown RBP9.54□□□□□ -0.88
CLK3-222ENST00000568232 KLHL22Q53GT1 634 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 CCDC92Q53HC0 331 aaPredicted RBP9.54□□□□□ -0.88
CLK3-222ENST00000568232 NKAPLQ5M9Q1 402 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 ZNF826PQ6ZT77 177 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 MSANTD1Q6ZTZ1 278 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 NKAIN4Q8IVV8 208 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 OR1F12Q8NHA8 337 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 MUC7Q8TAX7 377 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 TMEM255BQ8WV15 326 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 RCC1LQ96I51 464 aaKnown RBP9.54□□□□□ -0.88
CLK3-222ENST00000568232 MPP4Q96JB8 637 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 MAELQ96JY0 434 aaKnown RBP9.54□□□□□ -0.88
CLK3-222ENST00000568232 ZNF583Q96ND8 569 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 CCL13Q99616 98 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 CPPED1Q9BRF8 314 aaPredicted RBP9.54□□□□□ -0.88
CLK3-222ENST00000568232 DCTN5Q9BTE1 182 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 FAM234AQ9H0X4 552 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 IKZF5Q9H5V7 419 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 ZNF446Q9NWS9 450 aa9.54□□□□□ -0.88
CLK3-222ENST00000568232 NPIPB13A6NJU9 1138 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 NPIPB4C9JG80 1138 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 TYROBPO43914 113 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 PF4P02776 101 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 CA6P23280 308 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 RGS6P49758 472 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 UBE2E1P51965 193 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 LRRC75BQ2VPJ9 315 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 C11orf91Q3C1V1 193 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 ALG10Q5BKT4 473 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 CMTM4Q8IZR5 234 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 GCSAMQ8N6F7 178 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 PIFOQ8TCI5 191 aa9.53□□□□□ -0.88
CLK3-222ENST00000568232 APOBEC3DQ96AK3 386 aaPredicted RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms