RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MSMPQ1L6U9 139 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 MST1LQ2TV78 715 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 MEDAGQ5VYS4 303 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 LRP11Q86VZ4 500 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 OR51G2Q8NGK0 314 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 OR10S1Q8NGN2 331 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 ST7LQ8TDW4 575 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 ZNF582Q96NG8 517 aaPredicted RBP14.78□□□□□ -0.04
CLN3-217ENST00000565354 KCNJ15Q99712 375 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 BARX1Q9HBU1 254 aaPredicted RBP14.78□□□□□ -0.04
CLN3-217ENST00000565354 TUBG2Q9NRH3 451 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 SLCO1C1Q9NYB5 712 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 PTTG3PQ9NZH4 202 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 TAAR3PQ9P1P4 343 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 NKX1-2Q9UD57 310 aaPredicted RBP14.78□□□□□ -0.04
CLN3-217ENST00000565354 N6AMT1Q9Y5N5 214 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 H3BSA7 217 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 H7C417 338 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 CLPTM1O96005 669 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 APOC1P02654 83 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 MT-ND5P03915 603 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 ACSM4P0C7M7 580 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 ZNF250P15622 560 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 HTR1FP30939 366 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 PPOXP50336 477 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 MALLQ13021 153 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 GGTLC2Q14390 218 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 ALKBH6Q3KRA9 238 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 TTC23Q5W5X9 447 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 KCTD18Q6PI47 426 aaPredicted RBP14.77□□□□□ -0.05
CLN3-217ENST00000565354 DRAM2Q6UX65 266 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 KRT77Q7Z794 578 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 SLC35F2Q8IXU6 374 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 DHRSXQ8N5I4 330 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 KLF14Q8TD94 323 aaPredicted RBP14.77□□□□□ -0.05
CLN3-217ENST00000565354 MARS2Q96GW9 593 aaKnown RBP14.77□□□□□ -0.05
CLN3-217ENST00000565354 Q96MT0 163 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 DOK1Q99704 481 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 RAB1BQ9H0U4 201 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 CLN6Q9NWW5 311 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.77□□□□□ -0.05
CLN3-217ENST00000565354 STARD10Q9Y365 291 aa14.77□□□□□ -0.05
CLN3-217ENST00000565354 TMEM129A0AVI4 362 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 A8MV72 311 aaPredicted RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 ZNF670-ZNF695F2Z2N8 137 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 PHYHO14832 338 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 SLC16A6O15403 523 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 TIMM8AO60220 97 aaPredicted RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 ADRA2AP08913 450 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 MPV17P39210 176 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 ALDH3B1P43353 468 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 CX3CR1P49238 355 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 HCCSP53701 268 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 SNRPGP62308 76 aaKnown RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 IL5RAQ01344 420 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 TMED1Q13445 227 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 MAD2L1BPQ15013 274 aaPredicted RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 MBNL2Q5VZF2 373 aaKnown RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 RNF133Q8WVZ7 376 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 UBE2FQ969M7 185 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 MNTQ99583 582 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 VCX3BQ9H321 246 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 MS4A5Q9H3V2 200 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 SP140LQ9H930 580 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 HAO2Q9NYQ3 351 aa14.76□□□□□ -0.05
CLN3-217ENST00000565354 MYEF2Q9P2K5 600 aaKnown RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 YLPM1P49750 1951 aaKnown RBP14.76□□□□□ -0.05
CLN3-217ENST00000565354 IGLV3-9A0A075B6K5 115 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 PLSCR5A0PG75 271 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 ENTPD6O75354 484 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 ANXA2P07355 339 aaKnown RBP14.75□□□□□ -0.05
CLN3-217ENST00000565354 SBK2P0C263 348 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 FAM157CP0CG43 387 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 OCLNQ16625 522 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 KRTAP27-1Q3LI81 207 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 NAA40Q86UY6 237 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 ENTHD1Q8IYW4 607 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 SETD9Q8NE22 299 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 ASB17Q8WXJ9 295 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 CMBLQ96DG6 245 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 AMELYQ99218 206 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 C1QTNF5Q9BXJ0 243 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 TTTY10Q9BZA0 68 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 TPK1Q9H3S4 243 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 POFUT1Q9H488 388 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 ADGRL4Q9HBW9 690 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 IKZF2Q9UKS7 526 aa14.75□□□□□ -0.05
CLN3-217ENST00000565354 PLCE1Q9P212 2302 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 E9PQ18 207 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 TBX1O43435 398 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 SSX4O60224 188 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 NDUFS7O75251 213 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 APOL3O95236 402 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 IGHV3-13P01766 116 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 IGHV4-39P01824 125 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 ALOX5APP20292 161 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 RSPO1Q2MKA7 263 aaPredicted RBP14.74□□□□□ -0.05
CLN3-217ENST00000565354 LRRN1Q6UXK5 716 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 DNM1P46Q6ZS02 220 aa14.74□□□□□ -0.05
CLN3-217ENST00000565354 RHOUQ7L0Q8 258 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms