RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 UPB1Q9UBR1 384 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 DAPK2Q9UIK4 370 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 RABL2BQ9UNT1 228 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SLC22A13Q9Y226 551 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 AK6Q9Y3D8 172 aaKnown RBP7.85□□□□□ -1.15
VPS39-207ENST00000563692 ZNF175Q9Y473 711 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 TIMM10BQ9Y5J6 103 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 UNC79Q9P2D8 2635 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 TRBV5-7A0A0A0MS05 114 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 A0A1B0GVI7 797 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 SLC22A20A6NK97 555 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ANXA2P2A6NMY6 339 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ZNF587BE7ETH6 402 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 AQP7O14520 342 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 DVL2O14641 736 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 RER1O15258 196 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 PIN1P1O15428 100 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 HPGDSO60760 199 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 SRSF10O75494 262 aaKnown RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 CLDN14O95500 239 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ANXA2P07355 339 aaKnown RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 PTGER4P35408 488 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 EVX1P49640 407 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 PSMA6P60900 246 aaKnown RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 HIST1H3AP68431 136 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ADORA2A-AS1P86434 159 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 MFGE8Q08431 387 aaPredicted RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 ENDOGQ14249 297 aaKnown RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 CEACAM16Q2WEN9 425 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 CEP78Q5JTW2 689 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ELFN2Q5R3F8 820 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 HIST2H3PS2Q5TEC6 136 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 STAC2Q6ZMT1 411 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 CFAP77Q6ZQR2 320 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 HIST2H3AQ71DI3 136 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 LRRC28Q86X40 367 aaPredicted RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 LAX1Q8IWV1 398 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ELMOD2Q8IZ81 293 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 SLC22A24Q8N4F4 322 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 GDPD1Q8N9F7 314 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 MINDY2Q8NBR6 621 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 CCDC54Q8NEL0 328 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 OR13C3Q8NGS6 347 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 FNDC9Q8TBE3 224 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ASB5Q8WWX0 329 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 RGP1Q92546 391 aaPredicted RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 RND1Q92730 232 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 NABP1Q96AH0 204 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 APH1AQ96BI3 265 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 FOXB1Q99853 325 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 PRDM14Q9GZV8 571 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 MIXL1Q9H2W2 232 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 BRD7Q9NPI1 651 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 ABCB10Q9NRK6 738 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 DDX28Q9NUL7 540 aaKnown RBP7.84□□□□□ -1.15
VPS39-207ENST00000563692 TMEM38BQ9NVV0 291 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 FAM206AQ9NX38 181 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 FBXL3Q9UKT7 428 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 FOXJ3Q9UPW0 622 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 LIPGQ9Y5X9 500 aa7.84□□□□□ -1.15
VPS39-207ENST00000563692 CREBBPQ92793 2442 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 IFITM5A6NNB3 132 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 AHRRA9YTQ3 701 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 RPL36A-HNRNPH2H7BZ11 118 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 AIPO00170 330 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 ZNHIT1O43257 154 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 TBX1O43435 398 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 SGCEO43556 437 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 SYT7O43581 403 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 APOA1P02647 267 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 CALCBP10092 127 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 NTF4P34130 210 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 CX3CR1P49238 355 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 PRKXP51817 358 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 TPTEP56180 551 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 OR10A3P58181 314 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 PITPNAQ00169 270 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 GALK2Q01415 458 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 PYDC2Q56P42 97 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 TSPO2Q5TGU0 170 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 GLT8D1Q68CQ7 371 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 SLC16A14Q7RTX9 510 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 SERPINA12Q8IW75 414 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 OR8H2Q8N162 312 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 UBE2J2Q8N2K1 259 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 SAMD12Q8N8I0 201 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 OR5D14Q8NGL3 314 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 OR10S1Q8NGN2 331 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 TRMT10AQ8TBZ6 339 aaKnown RBP7.83□□□□□ -1.16
VPS39-207ENST00000563692 PPP1R14AQ96A00 147 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 FOXRED1Q96CU9 486 aaPredicted RBP7.83□□□□□ -1.16
VPS39-207ENST00000563692 PGAM5Q96HS1 289 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 DMRTA2Q96SC8 542 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 HDHD2Q9H0R4 259 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 PLSCR2Q9NRY7 297 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 PLEK2Q9NYT0 353 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 SPRR3Q9UBC9 169 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 NUFIP1Q9UHK0 495 aaKnown RBP7.83□□□□□ -1.16
VPS39-207ENST00000563692 SPATA2Q9UM82 520 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 N6AMT1Q9Y5N5 214 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms