RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 AZGP1P25311 298 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 ALDH3B1P43353 468 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 SLC6A9P48067 706 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 POU3F4P49335 361 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 UCNP55089 124 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 CLDN6P56747 220 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 CLDN18P56856 261 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 ZNF121P58317 390 aaPredicted RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 GALK2Q01415 458 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 IFITM3Q01628 133 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 MALLQ13021 153 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 INSL4Q14641 139 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 MEF2DQ14814 521 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 INPP5JQ15735 1006 aaPredicted RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 BAK1Q16611 211 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 FAM166AQ6J272 317 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 ZNF529Q6P280 563 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 LRRC69Q6ZNQ3 347 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 CFAP77Q6ZQR2 320 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 LINC00696Q6ZRV3 163 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 DNM1P46Q6ZS02 220 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 GDPD3Q7L5L3 318 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 KRT74Q7RTS7 529 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 NUFIP2Q7Z417 695 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 NR2C2APQ86WQ0 139 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 LINC00346Q8IVM7 164 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 UBQLNLQ8IYU4 475 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 DNAAF1Q8NEP3 725 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 C1orf162Q8NEQ5 155 aaPredicted RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 PRSS33Q8NF86 280 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR1M1Q8NGA1 313 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR4M2Q8NGB6 313 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR5L1Q8NGL2 311 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR5M1Q8NGP8 315 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR13C5Q8NGS8 318 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR56B4Q8NH76 319 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR1F12Q8NHA8 337 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 HTRA1Q92743 480 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 FAM46BQ96A09 425 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 NABP1Q96AH0 204 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 ZNF385AQ96PM9 386 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 SIGLEC12Q96PQ1 595 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 SMAD5Q99717 465 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 NPAS1Q99742 590 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 ZNF416Q9BWM5 594 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 SRXN1Q9BYN0 137 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 PPIL3Q9H2H8 161 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 ZNF552Q9H707 407 aaPredicted RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 RHOFQ9HBH0 211 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 CRLF2Q9HC73 371 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 GPN1Q9HCN4 374 aaPredicted RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 OBP2BQ9NPH6 170 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 DEPPQ9NTK1 212 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 C14orf119Q9NWQ9 140 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 ANKRD10Q9NXR5 420 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 OR5V1Q9UGF6 321 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 IL17BQ9UHF5 180 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 RBMX2Q9Y388 322 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 hCG_2014768A0A024R1R8 64 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 PIGBOS1A0A0B4J2F0 54 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SPAARA0A1B0GVQ0 90 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 PMS2P1A4D2B8 440 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SLC22A20A6NK97 555 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 AHRRA9YTQ3 701 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 G3V3Y1 287 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 TM4SF5O14894 197 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 CA11O75493 328 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 PNPP00491 289 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 TPOP07202 933 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SNRPBP14678 240 aaKnown RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 C4BPBP20851 252 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 MPGP29372 298 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 HOXC12P31275 282 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 PRSS3P35030 304 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 ZNF93P35789 620 aaPredicted RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 ECI1P42126 302 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 MAGEA5P43359 124 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SELENOPP49908 381 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 CAV3P56539 151 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 CLDN20P56880 219 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 TAS2R19P59542 299 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 MFGE8Q08431 387 aaPredicted RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 ENDOGQ14249 297 aaKnown RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 PNLIPRP3Q17RR3 467 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SLC25A35Q3KQZ1 300 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 GLYATL3Q5SZD4 288 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 HES5Q5TA89 166 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 RSBN1Q5VWQ0 802 aaPredicted RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 OLFML2AQ68BL7 652 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 C3P1Q6ZMU1 363 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 ZNF813Q6ZN06 617 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 LHFPL2Q6ZUX7 228 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 P4HA3Q7Z4N8 544 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 NRARPQ7Z6K4 114 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 C17orf78Q8N4C9 275 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 JAGN1Q8N5M9 183 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 ZIC4Q8N9L1 334 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 CSNK2A3Q8NEV1 391 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SEMA6DQ8NFY4 1073 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms