RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PGBD2Q6P3X8 592 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 NAA40Q86UY6 237 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 OR52E2Q8NGJ4 325 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 OR5L1Q8NGL2 311 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 POP5Q969H6 163 aaKnown RBP15.9■□□□□ 0.14
VPS35-202ENST00000561713 MCUR1Q96AQ8 359 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 ZNF582Q96NG8 517 aaPredicted RBP15.9■□□□□ 0.14
VPS35-202ENST00000561713 CDRT15Q96T59 188 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 ATF6BQ99941 703 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 SLC30A2Q9BRI3 323 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 PNRC2Q9NPJ4 139 aaKnown RBP15.9■□□□□ 0.14
VPS35-202ENST00000561713 TUBG2Q9NRH3 451 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 OR5V1Q9UGF6 321 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 INSIG2Q9Y5U4 225 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 SOX21Q9Y651 276 aaPredicted RBP15.9■□□□□ 0.14
VPS35-202ENST00000561713 AUP1Q9Y679 476 aa15.9■□□□□ 0.14
VPS35-202ENST00000561713 C5orf63A6NC05 138 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 TVP23AA6NH52 213 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 ARPC3O15145 178 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 GGT2P36268 569 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 PMELP40967 661 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 SMIM11AP58511 58 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 TRAP1Q12931 704 aaKnown RBP15.89■□□□□ 0.13
VPS35-202ENST00000561713 GK2Q14410 553 aaPredicted RBP15.89■□□□□ 0.13
VPS35-202ENST00000561713 KRTAP27-1Q3LI81 207 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 PRAMEF6Q5VXH4 476 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 CYP2R1Q6VVX0 501 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 ZDHHC21Q8IVQ6 265 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 OR13G1Q8NGZ3 307 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 ZNRF4Q8WWF5 429 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 MAP6Q96JE9 813 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 BTBD10Q9BSF8 475 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 ZMAT3Q9HA38 289 aaKnown RBP15.89■□□□□ 0.13
VPS35-202ENST00000561713 CD300AQ9UGN4 299 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 TMCC3Q9ULS5 477 aa15.89■□□□□ 0.13
VPS35-202ENST00000561713 LCATP04180 440 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 RNASE1P07998 156 aaKnown RBP15.88■□□□□ 0.13
VPS35-202ENST00000561713 IGHV4-38-2P0DP08 117 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 SRP9P49458 86 aaKnown RBP15.88■□□□□ 0.13
VPS35-202ENST00000561713 PPP1R8Q12972 351 aaKnown RBP15.88■□□□□ 0.13
VPS35-202ENST00000561713 COLCA1Q6ZS62 124 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 CPLX4Q7Z7G2 160 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 ZBTB46Q86UZ6 589 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 DEFB107AQ8IZN7 70 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 MUC20Q8N307 709 aaPredicted RBP15.88■□□□□ 0.13
VPS35-202ENST00000561713 OR51L1Q8NGJ5 315 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 OR8D4Q8NGM9 314 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 OR10S1Q8NGN2 331 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 OR9Q1Q8NGQ5 310 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 OR2AJ1Q8NGZ0 328 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 MRI1Q9BV20 369 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 SSBP3Q9BWW4 388 aaPredicted RBP15.88■□□□□ 0.13
VPS35-202ENST00000561713 HCAR1Q9BXC0 346 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 UFSP2Q9NUQ7 469 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 CYB5R1Q9UHQ9 305 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 TAGLN3Q9UI15 199 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 CDH10Q9Y6N8 788 aa15.88■□□□□ 0.13
VPS35-202ENST00000561713 GNGT1P63211 74 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 IL13RA1P78552 427 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 MXRA7P84157 204 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 TSPAN31Q12999 210 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 SNAI3Q3KNW1 292 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 KLBQ86Z14 1044 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 PROKR2Q8NFJ6 384 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 OR2AE1Q8NHA4 323 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 GNPDA2Q8TDQ7 276 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 SLC25A28Q96A46 364 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 SLCO4A1Q96BD0 722 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 TMEM246Q9BRR3 403 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 CDADC1Q9BWV3 514 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 TMEM165Q9HC07 324 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 LRCH1Q9Y2L9 728 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 POLR3KQ9Y2Y1 108 aaPredicted RBP15.87■□□□□ 0.13
VPS35-202ENST00000561713 LYVE1Q9Y5Y7 322 aa15.87■□□□□ 0.13
VPS35-202ENST00000561713 TRAV40A0A0B4J280 105 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 POM121CA8CG34 1229 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 M0R135 149 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 WNT2P09544 360 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 CD80P33681 288 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 SLC9A3R2Q15599 337 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 SLC36A3Q495N2 470 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 SLC27A4Q6P1M0 643 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 MRPL21Q7Z2W9 205 aaKnown RBP15.86■□□□□ 0.13
VPS35-202ENST00000561713 OR52L1Q8NGH7 329 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 ZNF799Q96GE5 643 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 IL1RAPQ9NPH3 570 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 TBC1D23Q9NUY8 699 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 TMEM100Q9NV29 134 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 VNN3Q9NY84 501 aa15.86■□□□□ 0.13
VPS35-202ENST00000561713 NOTCH1P46531 2555 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 MDFIC2A0A1B0GVS7 189 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 BHLHE40O14503 412 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 FAM20BO75063 409 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 SOX14O95416 240 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 GYPBP06028 91 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 MDKP21741 143 aaPredicted RBP15.85■□□□□ 0.13
VPS35-202ENST00000561713 IFNGR2P38484 337 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 GNB2P62879 340 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 PAX2Q02962 417 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 MAB21L1Q13394 359 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms