RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PARP8Q8N3A8 854 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 SLC26A10Q8NG04 563 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 OR4K13Q8NH42 304 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 FANK1Q8TC84 345 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 DACT3Q96B18 629 aaPredicted RBP9.72□□□□□ -0.85
USP3-220ENST00000561381 OR52D1Q9H346 318 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 PNRC2Q9NPJ4 139 aaKnown RBP9.72□□□□□ -0.85
USP3-220ENST00000561381 RPRD1BQ9NQG5 326 aaKnown RBP9.72□□□□□ -0.85
USP3-220ENST00000561381 TMEM100Q9NV29 134 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 TRAV40A0A0B4J280 105 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 A0A1B0GWJ7 208 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 OR6C68A6NDL8 312 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 F5H5K5 113 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 IFNL4K9M1U5 179 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 NDUFAB1O14561 156 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 SEMG1P04279 462 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 RNASE1P07998 156 aaKnown RBP9.71□□□□□ -0.86
USP3-220ENST00000561381 ANOS1P23352 680 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 FPR3P25089 353 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 SPIBQ01892 262 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 GK2Q14410 553 aaPredicted RBP9.71□□□□□ -0.86
USP3-220ENST00000561381 KRT72Q14CN4 511 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 RFX4Q33E94 735 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 ZNF404Q494X3 552 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 PRR31Q5SQ13 230 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 PRAMEF6Q5VXH4 476 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 PGM2L1Q6PCE3 622 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 DNM1P34Q6PK57 102 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 SHISA2Q6UWI4 295 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 BTNL3Q6UXE8 466 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 RAB40AQ8WXH6 277 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 UPRTQ96BW1 309 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 NEIL1Q96FI4 390 aaPredicted RBP9.71□□□□□ -0.86
USP3-220ENST00000561381 PITX2Q99697 317 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 CDADC1Q9BWV3 514 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 MYLK2Q9H1R3 596 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 UNKLQ9H9P5 680 aaKnown RBP9.71□□□□□ -0.86
USP3-220ENST00000561381 ADA2Q9NZK5 511 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 MIOXQ9UGB7 285 aa9.71□□□□□ -0.86
USP3-220ENST00000561381 SAMD4AQ9UPU9 718 aaKnown RBP9.71□□□□□ -0.86
USP3-220ENST00000561381 C5orf63A6NC05 138 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 ARPC3O15145 178 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 GADD45GO95257 159 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 PLATP00750 562 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 RENP00797 406 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 LCATP04180 440 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 SLC6A6P31641 620 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 MSX2P35548 267 aaPredicted RBP9.7□□□□□ -0.86
USP3-220ENST00000561381 GGT2P36268 569 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 RPS27P42677 84 aaKnown RBP9.7□□□□□ -0.86
USP3-220ENST00000561381 PITPNBP48739 271 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 TRAP1Q12931 704 aaKnown RBP9.7□□□□□ -0.86
USP3-220ENST00000561381 MPPED2Q15777 294 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 ZNF181Q2M3W8 571 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 CLEC12AQ5QGZ9 265 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 SLC35F1Q5T1Q4 408 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 LRRN1Q6UXK5 716 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 ZBTB46Q86UZ6 589 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 SDR9C7Q8NEX9 313 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 OR8B3Q8NGG8 313 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 SLC25A28Q96A46 364 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 SLCO4A1Q96BD0 722 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 PLEKHA8Q96JA3 519 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 MAP6Q96JE9 813 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 OR8B2Q96RD0 313 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 ATF6BQ99941 703 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 ELAC2Q9BQ52 826 aaKnown RBP9.7□□□□□ -0.86
USP3-220ENST00000561381 IFT27Q9BW83 186 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 HCAR1Q9BXC0 346 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 SPAG4Q9NPE6 437 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 KRCC1Q9NPI7 259 aaPredicted RBP9.7□□□□□ -0.86
USP3-220ENST00000561381 UFSP2Q9NUQ7 469 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 MRPL22Q9NWU5 206 aaKnown RBP9.7□□□□□ -0.86
USP3-220ENST00000561381 CYB5R1Q9UHQ9 305 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 TMCC3Q9ULS5 477 aa9.7□□□□□ -0.86
USP3-220ENST00000561381 KIR2DS1A0A191URI9 304 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 LRRC30A6NM36 301 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 C22orf46C9J442 243 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 CLDN34H7C241 214 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 OR10H3O60404 316 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 FAM20BO75063 409 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 HLA-DQA2P01906 255 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 PPIAL4GP0DN37 164 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 PSKH1P11801 424 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 OMGP23515 440 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 CPT2P23786 658 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 NOS3P29474 1203 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 PYCR1P32322 319 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 GATA4P43694 442 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 MTNR1AP48039 350 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 RAD23AP54725 363 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 WDR25Q64LD2 544 aaPredicted RBP9.69□□□□□ -0.86
USP3-220ENST00000561381 LYPD4Q6UWN0 246 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 BRD3OSQ6XYD6 125 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 ZNF841Q6ZN19 808 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 C9orf139Q6ZV77 190 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 NLRC3Q7RTR2 1065 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 C1orf87Q8N0U7 546 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 FITM2Q8N6M3 262 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 OR10S1Q8NGN2 331 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms