RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PITX2Q99697 317 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 HOPXQ9BPY8 73 aaPredicted RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 PCGF1Q9BSM1 259 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 TRIM15Q9C019 465 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 FN3KRPQ9HA64 309 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SRA1Q9HD15 236 aaKnown RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 TNFRSF19Q9NS68 423 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 CMTM6Q9NX76 183 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 RNF7Q9UBF6 113 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 CAPN7Q9Y6W3 813 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 ENPP4Q9Y6X5 453 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 A0A0G2JK05 382 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 UNC119BA6NIH7 251 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 ZNF879B4DU55 563 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 F5H5K5 113 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 LGALS8O00214 317 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 IMPA2O14732 288 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 TNFRSF13BO14836 293 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 GMDSO60547 372 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 RENP00797 406 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 SERPINA1P01009 418 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 LCATP04180 440 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 H2AFXP16104 143 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 RHCEP18577 417 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 PSMB10P40306 273 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MDH1P40925 334 aaKnown RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 CD200P41217 278 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 CDKN2AP42771 156 aaKnown RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 OMPP47874 163 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 TPTEP56180 551 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 SMIM11AP58511 58 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MZT1Q08AG7 82 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MAB21L1Q13394 359 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 GK2Q14410 553 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 KRT72Q14CN4 511 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 OR8G1Q15617 311 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 RSPO1Q2MKA7 263 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 C11orf91Q3C1V1 193 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 FGD3Q5JSP0 725 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 FAM201AQ5SY85 155 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 METTL11BQ5VVY1 283 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 BRICD5Q6PL45 260 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 CORO6Q6QEF8 472 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 LYPD2Q6UXB3 125 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 ZNF841Q6ZN19 808 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 PTCHD4Q6ZW05 846 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 PGAP1Q75T13 922 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MRPL21Q7Z2W9 205 aaKnown RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 WFDC12Q8WWY7 111 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 DYRK2Q92630 601 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 FAM162AQ96A26 154 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 SLCO4A1Q96BD0 722 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 RCN3Q96D15 328 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 RSRC1Q96IZ7 334 aaKnown RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 TECTBQ96PL2 329 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 ERMAPQ96PL5 475 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MMP27Q9H306 513 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MMADHCQ9H3L0 296 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 WDR76Q9H967 626 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 MARCH7Q9H992 704 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 VIPAS39Q9H9C1 493 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 EFCAB1Q9HAE3 211 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 UFSP2Q9NUQ7 469 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 C1RLQ9NZP8 487 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 PDP1Q9P0J1 537 aaPredicted RBP7.63□□□□□ -1.19
HDDC3-204ENST00000559834 TMCC3Q9ULS5 477 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 B9D1Q9UPM9 204 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 LHFPL6Q9Y693 200 aa7.63□□□□□ -1.19
HDDC3-204ENST00000559834 TRAV38-1A0A0B4J264 116 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 C22orf46C9J442 243 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 ARPC3O15145 178 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 FAM20BO75063 409 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 GMNNO75496 209 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 ECDO95905 644 aaPredicted RBP7.62□□□□□ -1.19
HDDC3-204ENST00000559834 HLA-DQA2P01906 255 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 MELTFP08582 738 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 ACSM4P0C7M7 580 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 NOS3P29474 1203 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 GGT2P36268 569 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 CFHR2P36980 270 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 CBX1P83916 185 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 OR8B8Q15620 311 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 MEP1BQ16820 701 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 RFX4Q33E94 735 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 KRTAP27-1Q3LI81 207 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 SFRP4Q6FHJ7 346 aaPredicted RBP7.62□□□□□ -1.19
HDDC3-204ENST00000559834 SMARCD3Q6STE5 483 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 TSEN54Q7Z6J9 526 aaKnown RBP7.62□□□□□ -1.19
HDDC3-204ENST00000559834 OR6V1Q8N148 313 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 SPERTQ8NA61 448 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 WDFY2Q96P53 400 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 TSSK2Q96PF2 358 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 ATF6BQ99941 703 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 CITED1Q99966 193 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 CHIAQ9BZP6 476 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 ACOXLQ9NUZ1 547 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 FGFR1OP2Q9NVK5 253 aa7.62□□□□□ -1.19
HDDC3-204ENST00000559834 ARGLU1Q9NWB6 273 aaPredicted RBP7.62□□□□□ -1.19
HDDC3-204ENST00000559834 RNF114Q9Y508 228 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms