RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KIAA1549LQ6ZVL6 1849 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 TEX13DA0A0J9YY54 714 aaPredicted RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 CCL5P13501 91 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 HOXB2P14652 356 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 IL11P20809 199 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 LPAR6P43657 344 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 FHITP49789 147 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 POLR2GP62487 172 aaKnown RBP eCLIP10.16□□□□□ -0.78
LDLR-208ENST00000558518 EGR4Q05215 589 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 KIR2DS3Q14952 304 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 EIF4E3Q8N5X7 224 aaKnown RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 OR10H5Q8NGA6 315 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 PMM1Q92871 262 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 PFDN5Q99471 154 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 NMNAT2Q9BZQ4 307 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 RTN4RQ9BZR6 473 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 RHBDD3Q9Y3P4 386 aa10.16□□□□□ -0.78
LDLR-208ENST00000558518 SPTBN5Q9NRC6 3674 aaKnown RBP10.16□□□□□ -0.78
LDLR-208ENST00000558518 H0YIZ8 118 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 UTS2O95399 124 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 TSPAN15O95858 294 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ABOP16442 354 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 PJVKQ0ZLH3 352 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 OR2A2Q6IF42 318 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 LINC00469Q8N7U9 141 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 HSD17B11Q8NBQ5 300 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ZNF248Q8NDW4 579 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 VWCEQ96DN2 955 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 WDR92Q96MX6 357 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 NRIP2Q9BQI9 281 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 GSN-AS1Q9NRJ2 163 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ZNF275Q9NSD4 429 aaPredicted RBP10.15□□□□□ -0.78
LDLR-208ENST00000558518 KCNK7Q9Y2U2 307 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 MMP24Q9Y5R2 645 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 XRCC2O43543 280 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 FGF19O95750 216 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 OR8U9P0C7N5 309 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ZNF20P17024 532 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ZBTB25P24278 435 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ABCD3P28288 659 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 RPS10P46783 165 aaKnown RBP10.15□□□□□ -0.78
LDLR-208ENST00000558518 CSNK2A1P68400 391 aaPredicted RBP10.15□□□□□ -0.78
LDLR-208ENST00000558518 NOGQ13253 232 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ASPHD2Q6ICH7 369 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 DRAM2Q6UX65 266 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 CSNK2A3Q8NEV1 391 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 OR8U1Q8NH10 309 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 VSTM2LQ96N03 204 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 ZNF426Q9BUY5 554 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 GDE1Q9NZC3 331 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 OR52A1Q9UKL2 312 aa10.15□□□□□ -0.78
LDLR-208ENST00000558518 C9JQL5 133 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 SP6Q3SY56 376 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 KLHL24Q6TFL4 600 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 ZNF595Q8IYB9 648 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 AKR7LQ8NHP1 331 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 SPPL3Q8TCT6 385 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 SLC37A2Q8TED4 501 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 TSLPQ969D9 159 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 ASB16Q96NS5 453 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 SOX7Q9BT81 388 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 RAB33BQ9H082 229 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 GDF2Q9UK05 429 aaPredicted RBP10.15□□□□□ -0.79
LDLR-208ENST00000558518 OBSL1O75147 1896 aa10.15□□□□□ -0.79
LDLR-208ENST00000558518 ESPL1Q14674 2120 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 A0A1W2PPE2 198 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 K7EQS6 105 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 SOCS1O15524 211 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 NXPH3O95157 252 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 DHPSP49366 369 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 FXYD4P59646 89 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 POU3F1Q03052 451 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 VWA2Q5GFL6 755 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 ZNF684Q5T5D7 378 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 ABHD12BQ7Z5M8 362 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 MCHR2Q969V1 340 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 OR10C1Q96KK4 312 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 PLA2G2FQ9BZM2 168 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 EHFQ9NZC4 300 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 RCL1Q9Y2P8 373 aaKnown RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 TRBV5-7A0A0A0MS05 114 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 YIF1AO95070 293 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 KLF8O95600 359 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 DIRAS3O95661 229 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 GIMD1P0DJR0 217 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 ZNF44P15621 663 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 RAB38P57729 211 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 MEF2DQ14814 521 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 C1orf189Q5VU69 101 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 NT5CQ8TCD5 201 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 ADAMTS18Q8TE60 1221 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 S100PBPQ96BU1 408 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 NECAB3Q96P71 396 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 MAP3K3Q99759 626 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 UTP23Q9BRU9 249 aaKnown RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 UBQLN4Q9NRR5 601 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 HIF3AQ9Y2N7 669 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 B3GALT1Q9Y5Z6 326 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 MBTPS2O43462 519 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms