RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SMPD3Q9NY59 655 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-228ENST00000557302 HAO2Q9NYQ3 351 aa11.61□□□□□ -0.55
SHMT2-228ENST00000557302 DNAJC27Q9NZQ0 273 aa11.61□□□□□ -0.55
SHMT2-228ENST00000557302 WARS2Q9UGM6 360 aaKnown RBP11.61□□□□□ -0.55
SHMT2-228ENST00000557302 PURGQ9UJV8 347 aaKnown RBP11.61□□□□□ -0.55
SHMT2-228ENST00000557302 KLHDC2Q9Y2U9 406 aa11.61□□□□□ -0.55
SHMT2-228ENST00000557302 TMEM14AQ9Y6G1 99 aa11.61□□□□□ -0.55
SHMT2-228ENST00000557302 VPS13CQ709C8 3753 aa11.61□□□□□ -0.55
SHMT2-228ENST00000557302 LOC100130705A0A1B0GUX0 176 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 SLC2A1P11166 492 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 DAOP14920 347 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 KITLGP21583 273 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 HTR1FP30939 366 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 PDLIM4P50479 330 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 ZNF81P51508 661 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 MMP15P51511 669 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 HCCSP53701 268 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 SNRPGP62308 76 aaKnown RBP11.6□□□□□ -0.55
SHMT2-228ENST00000557302 POU4F2Q12837 409 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 TMED1Q13445 227 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 TNK1Q13470 666 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 KCTD18Q6PI47 426 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-228ENST00000557302 KRT77Q7Z794 578 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 ASB17Q8WXJ9 295 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 FAM168AQ92567 244 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 GTF3AQ92664 365 aaKnown RBP11.6□□□□□ -0.55
SHMT2-228ENST00000557302 UBE2FQ969M7 185 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 MNTQ99583 582 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 RHNO1Q9BSD3 238 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 SP140LQ9H930 580 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 ADGRL4Q9HBW9 690 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 FAM118AQ9NWS6 357 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 N6AMT1Q9Y5N5 214 aa11.6□□□□□ -0.55
SHMT2-228ENST00000557302 ZSCAN5BA6NJL1 495 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 H7C1Q1 480 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SLC16A6O15403 523 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 ANXA2P07355 339 aaKnown RBP11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SBK2P0C263 348 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SELEP16581 610 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 ATP6V1E1P36543 226 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 GK2Q14410 553 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-228ENST00000557302 CARTPTQ16568 116 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SNAI3Q3KNW1 292 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SLC25A30Q5SVS4 291 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 MEDAGQ5VYS4 303 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 OR2T2Q6IF00 324 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 LRRN1Q6UXK5 716 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 PGAP1Q75T13 922 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 MRPL21Q7Z2W9 205 aaKnown RBP11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SLC35F2Q8IXU6 374 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 ZNF555Q8NEP9 628 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 OR51G2Q8NGK0 314 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 UBASH3BQ8TF42 649 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 NIPAL2Q9H841 368 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 CLN6Q9NWW5 311 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 NKIRAS2Q9NYR9 191 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.59□□□□□ -0.55
SHMT2-228ENST00000557302 BOLA1Q9Y3E2 137 aa11.59□□□□□ -0.55
SHMT2-228ENST00000557302 SETD2Q9BYW2 2564 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-228ENST00000557302 IGHV4-30-2A0A087WSY4 118 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 LOC390937A0A1W2PQ73 354 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 SNTNA6NMZ2 147 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 H0YHG0 523 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 NDUFS8O00217 210 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 PHYHO14832 338 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 CASQ2O14958 399 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-228ENST00000557302 TPD52L2O43399 206 aaKnown RBP11.58□□□□□ -0.56
SHMT2-228ENST00000557302 TBX1O43435 398 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 SPRY3O43610 288 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 MPZL2O60487 215 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 ENTPD6O75354 484 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 NCR1O76036 304 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 IGHV1-46P01743 117 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 HPXP02790 462 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 FOSL1P15407 271 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 SLC25A16P16260 332 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 MAGEB1P43366 347 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 ZNF121P58317 390 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-228ENST00000557302 CCL8P80075 99 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 OCLNQ16625 522 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 TSTQ16762 297 aaKnown RBP11.58□□□□□ -0.56
SHMT2-228ENST00000557302 OGFRL1Q5TC84 451 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-228ENST00000557302 USP51Q70EK9 711 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 C10orf105Q8TEF2 133 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 C18orf12Q96KH6 178 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 COX4I2Q96KJ9 171 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 DIRC2Q96SL1 478 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 MROQ9BYG7 248 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 REG4Q9BYZ8 158 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 MSL2Q9HCI7 577 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 DLL4Q9NR61 685 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 DECR2Q9NUI1 292 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 IKZF2Q9UKS7 526 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 ZDHHC8Q9ULC8 765 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 COPS3Q9UNS2 423 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 LRP12Q9Y561 859 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 ZFHX3Q15911 3703 aa11.58□□□□□ -0.56
SHMT2-228ENST00000557302 C5orf63A6NC05 138 aa11.57□□□□□ -0.56
SHMT2-228ENST00000557302 IQCF6A8MYZ5 107 aa11.57□□□□□ -0.56
SHMT2-228ENST00000557302 RNF223E7ERA6 249 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms