RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	OR11L1	Q8NGX0	322 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689		Q8TCH9	128 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	WDFY2	Q96P53	400 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	TBX15	Q96SF7	602 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	ECSIT	Q9BQ95	431 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	HCAR1	Q9BXC0	346 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	TMCC3	Q9ULS5	477 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	PRPF19	Q9UMS4	504 aa	Known RBP	10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	A4GNT	Q9UNA3	340 aa		10.5	□□□□□ -0.73
SHMT2-223	ENST00000556689	IGHV1-69D	A0A0B4J2H0	117 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689		A0A1B0GWJ7	208 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	RER1	O15258	196 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	CIB2	O75838	187 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	IGHV1-69	P01742	117 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	IGHV4-59	P01825	116 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	CD14	P08571	375 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	IER3	P46695	156 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	SLC9A3	P48764	834 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	PRKCD	Q05655	676 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	MAB21L1	Q13394	359 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	SPATS1	Q496A3	300 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	SAMD4B	Q5PRF9	694 aa	Known RBP	10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	METTL11B	Q5VVY1	283 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	OTP	Q5XKR4	325 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	GDPGP1	Q6ZNW5	385 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	CALHM3	Q86XJ0	350 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	GLB1L2	Q8IW92	636 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	NRM	Q8IXM6	262 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	DEFB107A	Q8IZN7	70 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	RNF113B	Q8IZP6	322 aa	Known RBP	10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	LHX4	Q969G2	390 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	PRRC1	Q96M27	445 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689		Q96M85	177 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	BTBD10	Q9BSF8	475 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	DPAGT1	Q9H3H5	408 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	MMADHC	Q9H3L0	296 aa	Predicted RBP	10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	RERGL	Q9H628	205 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	WDR76	Q9H967	626 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	ADA2	Q9NZK5	511 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	ATPIF1	Q9UII2	106 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	COA3	Q9Y2R0	106 aa	Predicted RBP	10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	ADAM18	Q9Y3Q7	739 aa		10.49	□□□□□ -0.73
SHMT2-223	ENST00000556689	C5orf63	A6NC05	138 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	SLC16A7	O60669	478 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	FAM20B	O75063	409 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	KHDRBS3	O75525	346 aa	Known RBP	10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	DNAJC8	O75937	253 aa	Predicted RBP	10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	CTLA4	P16410	223 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	PSME3	P61289	254 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	C2orf68	Q2NKX9	166 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	CYBRD1	Q53TN4	286 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	MEST	Q5EB52	335 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	RABL3	Q5HYI8	236 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	CLEC12A	Q5QGZ9	265 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	ERICH5	Q6P6B1	374 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689		Q6ZSV7	163 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	LDLRAD3	Q86YD5	345 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	SCCPDH	Q8NBX0	429 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	FAM156A	Q8NDB6	213 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	GJC3	Q8NFK1	279 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	OR13C2	Q8NGS9	318 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	TPD52L3	Q96J77	140 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	ZNF570	Q96NI8	536 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	FNDC11	Q9BVV2	318 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	C16orf95	Q9H693	158 aa		10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689	NMNAT1	Q9HAN9	279 aa	Predicted RBP	10.48	□□□□□ -0.73
SHMT2-223	ENST00000556689		A0A0U1RQK1	487 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	GSTA4	O15217	222 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	NDUFA2	O43678	99 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	CSF1	P09603	554 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	FUT4	P22083	530 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	KDELR2	P33947	212 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	CD200	P41217	278 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	YAP1	P46937	504 aa	Known RBP	10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	ARF6	P62330	175 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	SELENOW	P63302	87 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	TRAM2	Q15035	370 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	MPPED2	Q15777	294 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	KCNMB1	Q16558	191 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	ZBED5	Q49AG3	693 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	SFRP4	Q6FHJ7	346 aa	Predicted RBP	10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	FAM122B	Q7Z309	247 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	LRTOMT	Q8WZ04	291 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	ZNF583	Q96ND8	569 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	COQ7	Q99807	217 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	KCTD14	Q9BQ13	255 aa	Predicted RBP	10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	NDEL1	Q9GZM8	345 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	HDHD2	Q9H0R4	259 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	SIRPD	Q9H106	197 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	RASSF4	Q9H2L5	321 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	FN3KRP	Q9HA64	309 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	UFSP2	Q9NUQ7	469 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	RHCG	Q9UBD6	479 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	RNF7	Q9UBF6	113 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	CTSZ	Q9UBR2	303 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	POLR1D	Q9Y2S0	133 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	FAM96B	Q9Y3D0	163 aa		10.47	□□□□□ -0.73
SHMT2-223	ENST00000556689	DOCK11	Q5JSL3	2073 aa		10.46	□□□□□ -0.73
SHMT2-223	ENST00000556689		A0A087WUU8	490 aa		10.46	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms