RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RAB36O95755 333 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 IFNA5P01569 189 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PMP2P02689 132 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PPBPP02775 128 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CLPSP04118 112 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CSF3P09919 207 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CD27P26842 260 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 GIFP27352 417 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CD38P28907 300 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 EFNA3P52797 238 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PPP3R1P63098 170 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 RAB40BQ12829 278 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 MLLT11Q13015 90 aaPredicted RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 EXOSC2Q13868 293 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 OR1Q1Q15612 314 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 HAGHQ16775 308 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 C3orf38Q5JPI3 329 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 LIPKQ5VXJ0 399 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 RDH10Q8IZV5 341 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 DUSP19Q8WTR2 217 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 GLMPQ8WWB7 406 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NKD1Q969G9 470 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ABHD17AQ96GS6 310 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TIMP4Q99727 224 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NDUFAF3Q9BU61 184 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ZNF426Q9BUY5 554 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ALG8Q9BVK2 526 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 DPH1Q9BZG8 443 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 POLR2J2Q9GZM3 115 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PTGES2Q9H7Z7 377 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ANKHQ9HCJ1 492 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 FGF20Q9NP95 211 aaPredicted RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 FLRT3Q9NZU0 649 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NPIPA1Q9UND3 350 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 YARS2Q9Y2Z4 477 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 SF3B6Q9Y3B4 125 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CELSR3Q9NYQ7 3312 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 A0A0B4J2E0 115 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 A0A1B0GX12 115 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TRAPPC13A5PLN9 417 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 LILRA5A6NI73 299 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 F6UZH7 168 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NPIPB9F8W1W9 429 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 J3QRE1 110 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ENSAO43768 121 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CT45A8P0DMV1 189 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CT45A9P0DMV2 189 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 HIST1H1BP16401 226 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 MAOAP21397 527 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 MTNR1AP48039 350 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 KLF3P57682 345 aaPredicted RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PMPCAQ10713 525 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PDZK1IP1Q13113 114 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ODF4Q2M2E3 257 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TMEM249Q2WGJ8 235 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PGGHGQ32M88 737 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 SMIM21Q3B7S5 101 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 EIPR1Q53HC9 387 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CT45A2Q5DJT8 189 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 C11orf42Q8N5U0 333 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CLDN22Q8N7P3 220 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 GPX8Q8TED1 209 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TMEM234Q8WY98 164 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CNOT9Q92600 299 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TAAR8Q969N4 342 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 RNFT2Q96EX2 444 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 THOC3Q96J01 351 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 SLC38A2Q96QD8 506 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 G6PC3Q9BUM1 346 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 HCAR1Q9BXC0 346 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 UBQLN3Q9H347 655 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 RAB9BQ9NP90 201 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 HINT3Q9NQE9 182 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NANSQ9NR45 359 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 DNAJB12Q9NXW2 375 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 GAR1Q9NY12 217 aaKnown RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CBLCQ9ULV8 474 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CDH10Q9Y6N8 788 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 CPAMD8Q8IZJ3 1885 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TMEM129A0AVI4 362 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 FAM183AA6NL82 134 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 M0R233 179 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 SRPX2O60687 465 aaPredicted RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NBEAP1P0C6P0 100 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 MYL9P24844 172 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 IFNGR2P38484 337 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ARRB1P49407 418 aaPredicted RBP4.58□□□□□ -1.68
TMEM260-210ENST00000556422 PPT1P50897 306 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 RAG2P55895 527 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 GUCA2AQ02747 115 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TNK1Q13470 666 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 GAMTQ14353 236 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 ELOCQ15369 112 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 NXNL2Q5VZ03 156 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 COLCA1Q6ZS62 124 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 TMPRSS11FQ6ZWK6 438 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 RTN4RL2Q86UN3 420 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 SIRT6Q8N6T7 355 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 STEAP2Q8NFT2 490 aa4.58□□□□□ -1.68
TMEM260-210ENST00000556422 OR4F15Q8NGB8 312 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms