RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZNF878C9JN71 531 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 M0R129 80 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 PPIHO43447 177 aaKnown RBP11.64□□□□□ -0.55
SHMT2-219ENST00000555563 SELENOFO60613 162 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 LCATP04180 440 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 SLC2A5P22732 501 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 TMEM33P57088 247 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 ESRRGP62508 458 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 HNRNPA0Q13151 305 aaKnown RBP11.64□□□□□ -0.55
SHMT2-219ENST00000555563 CDK5R2Q13319 367 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 PTGES3Q15185 160 aaKnown RBP11.64□□□□□ -0.55
SHMT2-219ENST00000555563 SNAPC1Q16533 368 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 SNAI3Q3KNW1 292 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 KLHL12Q53G59 568 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 OR2T2Q6IF00 324 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 CXXC5Q7LFL8 322 aaKnown RBP11.64□□□□□ -0.55
SHMT2-219ENST00000555563 BHLHE23Q8NDY6 225 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 OR2Z1Q8NG97 314 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 MSI2Q96DH6 328 aaKnown RBP11.64□□□□□ -0.55
SHMT2-219ENST00000555563 EGLN1Q9GZT9 426 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 CENPMQ9NSP4 180 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 TVP23BQ9NYZ1 205 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 OAZ3Q9UMX2 235 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 ZANQ9Y493 2812 aa11.64□□□□□ -0.55
SHMT2-219ENST00000555563 SAC3D1A6NKF1 404 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 ZAR1LA6NP61 321 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 IQCF6A8MYZ5 107 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 H3BNX3 289 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 WNT9BO14905 357 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 PRKYO43930 277 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 SLC2A1P11166 492 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 IGFBP5P24593 272 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 EPHA2P29317 976 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 NAA10P41227 235 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-219ENST00000555563 PRKXP51817 358 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 RPS7P62081 194 aaKnown RBP11.63□□□□□ -0.55
SHMT2-219ENST00000555563 GK2Q14410 553 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-219ENST00000555563 TAF13Q15543 124 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 HFEQ30201 348 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 SLC35D3Q5M8T2 416 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 AVPI1Q5T686 147 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 DRAM2Q6UX65 266 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 MRPL21Q7Z2W9 205 aaKnown RBP11.63□□□□□ -0.55
SHMT2-219ENST00000555563 OR8G5Q8NG78 346 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 OR10AD1Q8NGE0 317 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 CLDND2Q8NHS1 167 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 HPS1Q92902 700 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 CENPNQ96H22 339 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-219ENST00000555563 AMELYQ99218 206 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 KCNJ15Q99712 375 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 CIB1Q99828 191 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 ABHD6Q9BV23 337 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 TREM2Q9NZC2 230 aa11.63□□□□□ -0.55
SHMT2-219ENST00000555563 TMEFF2Q9UIK5 374 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-219ENST00000555563 LOC100289279A0A1B0GTE1 492 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 CCDC182A6NF36 153 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 CLDN25C9JDP6 229 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 CRLF1O75462 422 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 TNFSF4P23510 183 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 GRB2P62993 217 aaKnown RBP11.62□□□□□ -0.55
SHMT2-219ENST00000555563 MVKQ03426 396 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 MALLQ13021 153 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 APOFQ13790 326 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 GLYATL3Q5SZD4 288 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 SLX4IPQ5VYV7 408 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 C12orf73Q69YU5 71 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 FAM166AQ6J272 317 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 ZFP1Q6P2D0 407 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 SHFQ7M4L6 423 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 ZNF283Q8N7M2 679 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 OR2AE1Q8NHA4 323 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 RNF133Q8WVZ7 376 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 ITLN1Q8WWA0 313 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 CCL17Q92583 94 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 ZNF582Q96NG8 517 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-219ENST00000555563 PKP2Q99959 881 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 PRRG3Q9BZD7 231 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 DCAF16Q9NXF7 216 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 KLHDC2Q9Y2U9 406 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 WIPI2Q9Y4P8 454 aa11.62□□□□□ -0.55
SHMT2-219ENST00000555563 MLNRO43193 412 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 SELEP16581 610 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 HSD11B1P28845 292 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 RBMXP38159 391 aaKnown RBP11.61□□□□□ -0.55
SHMT2-219ENST00000555563 OPRL1P41146 370 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 SLC15A1P46059 708 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 CX3CR1P49238 355 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 CDH15P55291 814 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 ZNF92Q03936 586 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 PGAP1Q75T13 922 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 OR13G1Q8NGZ3 307 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 OTOSQ8NHW6 89 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 OR2V2Q96R30 315 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 SLC30A2Q9BRI3 323 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 OSBPL10Q9BXB5 764 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 GABARAPL3Q9BY60 117 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 DNAJC27Q9NZQ0 273 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 ENOPH1Q9UHY7 261 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 N6AMT1Q9Y5N5 214 aa11.61□□□□□ -0.55
SHMT2-219ENST00000555563 A0A1B0GWJ7 208 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms