RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 RFKQ969G6 155 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ITFG2Q969R8 447 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 CMBLQ96DG6 245 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ZMYND19Q96E35 227 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 TIMD4Q96H15 378 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF582Q96NG8 517 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ABHD6Q9BV23 337 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 BPESC1Q9GZL8 116 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 CENPMQ9NSP4 180 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 PTTG3PQ9NZH4 202 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF391Q9UJN7 358 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 LAMP5Q9UJQ1 280 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ZSCAN5BA6NJL1 495 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 SNTNA6NMZ2 147 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 IQCF6A8MYZ5 107 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 TLX2O43763 284 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 PRKYO43930 277 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 HPXP02790 462 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 TACSTD2P09758 323 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 H2BFMP0C1H6 154 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 RPS27P42677 84 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 CRYBB2P43320 205 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 GPR6P46095 362 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 GZMKP49863 264 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 CDK5R2Q13319 367 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 TMED1Q13445 227 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 RIN1Q13671 783 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 HFEQ30201 348 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 ALKBH6Q3KRA9 238 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 PGAP1Q75T13 922 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 ZCCHC24Q8N2G6 241 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 FTMTQ8N4E7 242 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF283Q8N7M2 679 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 OR8G5Q8NG78 346 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 OR13G1Q8NGZ3 307 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 TRUB1Q8WWH5 349 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 EME1Q96AY2 570 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 RDH12Q96NR8 316 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 IMPAD1Q9NX62 359 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 HAO2Q9NYQ3 351 aa12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 WARS2Q9UGM6 360 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-207ENST00000554051 CLDN25C9JDP6 229 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 SPRY3O43610 288 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 CD5LO43866 347 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF254O75437 659 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 NCR1O76036 304 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 OPRL1P41146 370 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 NAA10P41227 235 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 MAGEB1P43366 347 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 CX3CR1P49238 355 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 PSMA6P60900 246 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 CCL8P80075 99 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 TNFAIP6P98066 277 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 MZT1Q08AG7 82 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 RSPO1Q2MKA7 263 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEM249Q2WGJ8 235 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 AADACL4Q5VUY2 407 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 USP51Q70EK9 711 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 MEPCEQ7L2J0 689 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 KLBQ86Z14 1044 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 CBR4Q8N4T8 237 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 TCEANCQ8N8B7 351 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 BBS1Q8NFJ9 593 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 TEAD3Q99594 435 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 POFUT1Q9H488 388 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 IL19Q9UHD0 177 aa12.24□□□□□ -0.45
CCDC88C-207ENST00000554051 CCDC182A6NF36 153 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 ACOD1A6NK06 481 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MPZL2O60487 215 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 SELENOFO60613 162 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 RP2O75695 350 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 ANXA2P07355 339 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 PSKH1P11801 424 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 ALOX5APP20292 161 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 DCTDP32321 178 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 DDOSTP39656 456 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 SRP9P49458 86 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 EFNB1P98172 346 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 DBPQ10586 325 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 GK2Q14410 553 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 TSTQ16762 297 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MEDAGQ5VYS4 303 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 KRT77Q7Z794 578 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 PEG10Q86TG7 708 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 CELF2-AS1Q8N7Q2 184 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 OR2Z1Q8NG97 314 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 SPRYD4Q8WW59 207 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 SPSB4Q96A44 273 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 HRASLS5Q96KN8 279 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MYCBPQ99417 103 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MROQ9BYG7 248 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 OR10A2Q9H208 303 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MOB1AQ9H8S9 216 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MSL2Q9HCI7 577 aa12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF275Q9NSD4 429 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 MRPL15Q9P015 296 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.23□□□□□ -0.45
CCDC88C-207ENST00000554051 CR1P17927 2039 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 CHD3Q12873 2000 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms