RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 COPS4Q9BT78 406 aa13.03□□□□□ -0.32
SHMT2-204ENST00000553324 MARCH7Q9H992 704 aa13.03□□□□□ -0.32
SHMT2-204ENST00000553324 CENPMQ9NSP4 180 aa13.03□□□□□ -0.32
SHMT2-204ENST00000553324 LPAR3Q9UBY5 353 aa13.03□□□□□ -0.32
SHMT2-204ENST00000553324 ANK3Q12955 4377 aaKnown RBP13.02□□□□□ -0.32
SHMT2-204ENST00000553324 IQCF6A8MYZ5 107 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 ZNF878C9JN71 531 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 RPS27P42677 84 aaKnown RBP13.02□□□□□ -0.33
SHMT2-204ENST00000553324 SLC6A9P48067 706 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 HLXQ14774 488 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-204ENST00000553324 CHRFAM7AQ494W8 412 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 OR2T2Q6IF00 324 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 PLBD1Q6P4A8 553 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 LYPD4Q6UWN0 246 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 PGAP1Q75T13 922 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 ERI1Q8IV48 349 aaKnown RBP13.02□□□□□ -0.33
SHMT2-204ENST00000553324 ZNF454Q8N9F8 522 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 OR6N2Q8NGY6 317 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 CENPNQ96H22 339 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-204ENST00000553324 OSBPL10Q9BXB5 764 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 MED20Q9H944 212 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 KRT84Q9NSB2 600 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 TMEM100Q9NV29 134 aa13.02□□□□□ -0.33
SHMT2-204ENST00000553324 NOP16Q9Y3C1 178 aaKnown RBP13.02□□□□□ -0.33
SHMT2-204ENST00000553324 FN1P02751 2386 aaKnown RBP13.01□□□□□ -0.33
SHMT2-204ENST00000553324 B4DSR2 109 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 IFNL4K9M1U5 179 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 PCMT1P22061 227 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 EIF2B1Q14232 305 aaKnown RBP13.01□□□□□ -0.33
SHMT2-204ENST00000553324 GK2Q14410 553 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-204ENST00000553324 PTGES3Q15185 160 aaKnown RBP13.01□□□□□ -0.33
SHMT2-204ENST00000553324 KLHL12Q53G59 568 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 DPY19L4Q7Z388 723 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 NAA40Q86UY6 237 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 CPOQ8IVL8 374 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 TIGD4Q8IY51 512 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 OR10S1Q8NGN2 331 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 CLDND2Q8NHS1 167 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 ST7LQ8TDW4 575 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 LRTOMTQ8WZ04 291 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 SLC30A2Q9BRI3 323 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 BEX2Q9BXY8 128 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 SLC22A4Q9H015 551 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 OPA3Q9H6K4 179 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 TVP23BQ9NYZ1 205 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 CR1P17927 2039 aa13.01□□□□□ -0.33
SHMT2-204ENST00000553324 IFNA2P01563 188 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 ZNF16P17020 682 aaPredicted RBP13□□□□□ -0.33
SHMT2-204ENST00000553324 HNF1AP20823 631 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 HSD11B1P28845 292 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 SRP9P49458 86 aaKnown RBP13□□□□□ -0.33
SHMT2-204ENST00000553324 CDH15P55291 814 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 ACTR3P61158 418 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 TMEM236Q5W0B7 351 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 KDM4DQ6B0I6 523 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 ZFP1Q6P2D0 407 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 Q6ZR03 302 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 CXXC5Q7LFL8 322 aaKnown RBP13□□□□□ -0.33
SHMT2-204ENST00000553324 MRPL21Q7Z2W9 205 aaKnown RBP13□□□□□ -0.33
SHMT2-204ENST00000553324 AMIGO2Q86SJ2 522 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 OR5AS1Q8N127 324 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 RNF133Q8WVZ7 376 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 SPRYD4Q8WW59 207 aaPredicted RBP13□□□□□ -0.33
SHMT2-204ENST00000553324 RAB39BQ96DA2 213 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 SHARPINQ9H0F6 387 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 GABARAPL1Q9H0R8 117 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 PPP1R3CQ9UQK1 317 aa13□□□□□ -0.33
SHMT2-204ENST00000553324 LYNP07948 512 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 DDOSTP39656 456 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 PRKXP51817 358 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 RAD23AP54725 363 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 RPS7P62081 194 aaKnown RBP12.99□□□□□ -0.33
SHMT2-204ENST00000553324 MVKQ03426 396 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-204ENST00000553324 ZNF283Q8N7M2 679 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 OR52H1Q8NGJ2 320 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 OTOSQ8NHW6 89 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 THEM6Q8WUY1 208 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 ZMYND19Q96E35 227 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-204ENST00000553324 OR2V2Q96R30 315 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 ABHD6Q9BV23 337 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 REPIN1Q9BWE0 567 aaKnown RBP12.99□□□□□ -0.33
SHMT2-204ENST00000553324 TMEM106BQ9NUM4 274 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 H2AFY2Q9P0M6 372 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-204ENST00000553324 WIPI2Q9Y4P8 454 aa12.99□□□□□ -0.33
SHMT2-204ENST00000553324 SVEP1Q4LDE5 3571 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 A0A1B0GWJ7 208 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 GGT3PA6NGU5 568 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 XRCC2O43543 280 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 H2BFMP0C1H6 154 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 CFL1P23528 166 aaKnown RBP12.98□□□□□ -0.33
SHMT2-204ENST00000553324 IL2RGP31785 369 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 DVL1P1P54792 670 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-204ENST00000553324 LMO4P61968 165 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 LCN1P1Q5VSP4 162 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 CELF2-AS1Q8N7Q2 184 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 ERGIC1Q969X5 290 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 TEAD3Q99594 435 aa12.98□□□□□ -0.33
SHMT2-204ENST00000553324 RBM4BQ9BQ04 359 aaKnown RBP12.98□□□□□ -0.33
SHMT2-204ENST00000553324 YIPF3Q9GZM5 350 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms