RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SLC6A7Q99884 636 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 TSSK6Q9BXA6 273 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 MUC13Q9H3R2 512 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 MAGIXQ9H6Y5 334 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 TMEM100Q9NV29 134 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 VNN3Q9NY84 501 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 KCNG2Q9UJ96 466 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 SAMHD1Q9Y3Z3 626 aaKnown RBP13.73□□□□□ -0.21
VPS29-207ENST00000549970 PPIAL4EA0A075B759 164 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 PPIAL4CA0A0B4J2A2 164 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 CEACAM18A8MTB9 384 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 F5H0A9 414 aaPredicted RBP13.72□□□□□ -0.21
VPS29-207ENST00000549970 PPIAL4DF5H284 164 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 TRAPPC2LH3BP13 241 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 M0R135 149 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 SOX14O95416 240 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 PPIAL4FP0DN26 164 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 PSKH1P11801 424 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 CALB2P22676 271 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 SLC6A9P48067 706 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 TPTEP56180 551 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 HILS1P60008 231 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 MS4A2Q01362 244 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 TRIM25Q14258 630 aaKnown RBP13.72□□□□□ -0.21
VPS29-207ENST00000549970 ESCO2Q56NI9 601 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 ZNF362Q5T0B9 420 aaPredicted RBP13.72□□□□□ -0.21
VPS29-207ENST00000549970 PGAP1Q75T13 922 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 MUC20Q8N307 709 aaPredicted RBP13.72□□□□□ -0.21
VPS29-207ENST00000549970 BPIFB2Q8N4F0 458 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 OR10S1Q8NGN2 331 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 OR4Q3Q8NH05 313 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 C22orf15Q8WYQ4 148 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 SPTSSAQ969W0 71 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 ZNF799Q96GE5 643 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 REEP1Q9H902 201 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 ARMC1Q9NVT9 282 aa13.72□□□□□ -0.21
VPS29-207ENST00000549970 IFNL4K9M1U5 179 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 GYPBP06028 91 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 SPARCP09486 303 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 ACTG1P63261 375 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 CRMP1Q14194 572 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 FAM98BQ52LJ0 330 aaKnown RBP13.71□□□□□ -0.21
VPS29-207ENST00000549970 OR2T5Q6IEZ7 315 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 USP43Q70EL4 1123 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 MRPL21Q7Z2W9 205 aaKnown RBP13.71□□□□□ -0.21
VPS29-207ENST00000549970 DCXRQ7Z4W1 244 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 LNX2Q8N448 690 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 CCDC197Q8NCU1 140 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 DEFB108BQ8NET1 73 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 OR2T29Q8NH02 315 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 ZFAND2BQ8WV99 257 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 SPRYD4Q8WW59 207 aaPredicted RBP13.71□□□□□ -0.21
VPS29-207ENST00000549970 CCDC124Q96CT7 223 aaKnown RBP13.71□□□□□ -0.21
VPS29-207ENST00000549970 SUCNR1Q9BXA5 334 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 COMMD3-BMI1R4GMX3 469 aa13.71□□□□□ -0.21
VPS29-207ENST00000549970 LRRC30A6NM36 301 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 A8MXK9 166 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 FAM107AO95990 144 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 FSHBP01225 129 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 CLUP10909 449 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 RPS2P15880 293 aaKnown RBP13.7□□□□□ -0.22
VPS29-207ENST00000549970 ANOS1P23352 680 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 PMELP40967 661 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 ZNF154Q13106 437 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 MICAQ29983 383 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 SNAI3Q3KNW1 292 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 FAM201AQ5SY85 155 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 C12orf54Q6X4T0 127 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 ZNF511Q8NB15 262 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 OR2T33Q8NG76 320 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 CLPTM1LQ96KA5 538 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 LRGUKQ96M69 825 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 JMJD8Q96S16 334 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 COPS4Q9BT78 406 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 RBM4Q9BWF3 364 aaKnown RBP13.7□□□□□ -0.22
VPS29-207ENST00000549970 TMEM165Q9HC07 324 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 DDX28Q9NUL7 540 aaKnown RBP13.7□□□□□ -0.22
VPS29-207ENST00000549970 OR5V1Q9UGF6 321 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 PRPF19Q9UMS4 504 aaKnown RBP13.7□□□□□ -0.22
VPS29-207ENST00000549970 BAIAP2Q9UQB8 552 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 POLR3KQ9Y2Y1 108 aaPredicted RBP13.7□□□□□ -0.22
VPS29-207ENST00000549970 INSIG2Q9Y5U4 225 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 AUP1Q9Y679 476 aa13.7□□□□□ -0.22
VPS29-207ENST00000549970 A0A1B0GWJ7 208 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 TRIM77I1YAP6 450 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 WNT2P09544 360 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 T-ENOLP0DO92 83 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 ZNF12P17014 697 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 SPI1P17947 270 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 FMO3P31513 532 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 ENTPD1P49961 510 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 PRKXP51817 358 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 MAB21L1Q13394 359 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 TAF13Q15543 124 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 ZNF181Q2M3W8 571 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 ARMCX4Q5H9R4 360 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 PRAMEF6Q5VXH4 476 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 C1orf87Q8N0U7 546 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 OR10G2Q8NGC3 310 aa13.69□□□□□ -0.22
VPS29-207ENST00000549970 OR6K6Q8NGW6 343 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms