RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 LIPNQ5VXI9 398 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 FAM57BQ71RH2 274 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 PRSS45Q7RTY3 260 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 FAM220AQ7Z4H9 259 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 TMEM171Q8WVE6 324 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 APOBEC3DQ96AK3 386 aaPredicted RBP18.24■□□□□ 0.51
VPS29-206ENST00000549578 C4orf36Q96KX1 117 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 DUSP21Q9H596 190 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 ISG20L2Q9H9L3 353 aaKnown RBP18.24■□□□□ 0.51
VPS29-206ENST00000549578 ERVK-18Q9QC07 812 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 J3QLW9 94 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 HS3ST1O14792 307 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 APOC1P02654 83 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 ZNF19P17023 458 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 MFGE8Q08431 387 aaPredicted RBP18.23■□□□□ 0.51
VPS29-206ENST00000549578 UNQ6126/PRO20091Q6UXV3 157 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 SLC25A40Q8TBP6 338 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 MYDGFQ969H8 173 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 OR2J1Q9GZK6 312 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 ZNF442Q9H7R0 627 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 PLEKHF2Q9H8W4 249 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 TMEM269A0A1B0GVZ9 245 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 PNPP00491 289 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 DCTDP32321 178 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 PSMB10P40306 273 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 KRTAP10-9P60411 292 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 RPS23P62266 143 aaKnown RBP18.23■□□□□ 0.51
VPS29-206ENST00000549578 ADIPOQQ15848 244 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 ZNF829Q3KNS6 432 aaPredicted RBP18.23■□□□□ 0.51
VPS29-206ENST00000549578 OR2G6Q5TZ20 316 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 RGS7BPQ6MZT1 257 aaPredicted RBP18.23■□□□□ 0.51
VPS29-206ENST00000549578 FBXW5Q969U6 566 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 MRPL48Q96GC5 212 aaKnown RBP18.23■□□□□ 0.51
VPS29-206ENST00000549578 DHRS9Q9BPW9 319 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 FAM206AQ9NX38 181 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 CHCHD3Q9NX63 227 aaKnown RBP18.23■□□□□ 0.51
VPS29-206ENST00000549578 PTTG3PQ9NZH4 202 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 ZNF319Q9P2F9 582 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 BLOC1S6Q9UL45 172 aa18.23■□□□□ 0.51
VPS29-206ENST00000549578 UNC79Q9P2D8 2635 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 TBX1O43435 398 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 SRSF10O75494 262 aaKnown RBP18.22■□□□□ 0.51
VPS29-206ENST00000549578 EEF1B2P24534 225 aaKnown RBP18.22■□□□□ 0.51
VPS29-206ENST00000549578 FABP6P51161 128 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 SYS1Q8N2H4 156 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 RORBQ92753 470 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 PELI1Q96FA3 418 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 PGAM5Q96HS1 289 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 GTF2A1LQ9UNN4 478 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 LRCH1Q9Y2L9 728 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 R4GMQ9 66 aa18.22■□□□□ 0.51
VPS29-206ENST00000549578 TACC2O95359 2948 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 RAI1Q7Z5J4 1906 aaPredicted RBP18.21■□□□□ 0.51
VPS29-206ENST00000549578 LOC110117498-PIK3R3F6TDL0 507 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 J3QW42 95 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 RGS10O43665 173 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 TACSTD2P09758 323 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 OR4A8P0C604 315 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 MMP16P51512 607 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 KCTD20Q7Z5Y7 419 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 KLHL36Q8N4N3 616 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 OR2AE1Q8NHA4 323 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 SPRYD4Q8WW59 207 aaPredicted RBP18.21■□□□□ 0.51
VPS29-206ENST00000549578 PPP1R14AQ96A00 147 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 RNF166Q96A37 237 aaPredicted RBP18.21■□□□□ 0.51
VPS29-206ENST00000549578 MARS2Q96GW9 593 aaKnown RBP18.21■□□□□ 0.51
VPS29-206ENST00000549578 CAB39Q9Y376 341 aaPredicted RBP18.21■□□□□ 0.51
VPS29-206ENST00000549578 CMAHPQ9Y471 501 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 ABCA12Q86UK0 2595 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 AKAP6Q13023 2319 aa18.21■□□□□ 0.51
VPS29-206ENST00000549578 MT-ND2P03891 347 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 APOBEC3AP31941 199 aaPredicted RBP18.2■□□□□ 0.5
VPS29-206ENST00000549578 MPV17P39210 176 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 PRSS12P56730 875 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 HLXQ14774 488 aaPredicted RBP18.2■□□□□ 0.5
VPS29-206ENST00000549578 GLYATL3Q5SZD4 288 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 ZNF544Q6NX49 715 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 LRP11Q86VZ4 500 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 OR8B12Q8NGG6 310 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 OR5L1Q8NGL2 311 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 KLF14Q8TD94 323 aaPredicted RBP18.2■□□□□ 0.5
VPS29-206ENST00000549578 COG8Q96MW5 612 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 SIGLEC11Q96RL6 698 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 MYCBPQ99417 103 aaPredicted RBP18.2■□□□□ 0.5
VPS29-206ENST00000549578 SYT3Q9BQG1 590 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 MRPL37Q9BZE1 423 aaKnown RBP18.2■□□□□ 0.5
VPS29-206ENST00000549578 CCDC90BQ9GZT6 254 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 PBOV1Q9GZY1 135 aa18.2■□□□□ 0.5
VPS29-206ENST00000549578 ASH1LQ9NR48 2969 aaKnown RBP18.2■□□□□ 0.5
VPS29-206ENST00000549578 ATE1O95260 518 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 CLPTM1O96005 669 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 HTR1AP08908 422 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 TTKP33981 857 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 SERPINF1P36955 418 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 GFOD2Q3B7J2 385 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 ZNF718Q3SXZ3 478 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 TMPRSS11AQ6ZMR5 421 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 C1orf174Q8IYL3 243 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 ZNF611Q8N823 705 aa18.19■□□□□ 0.5
VPS29-206ENST00000549578 OR52H1Q8NGJ2 320 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms