RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OR5AR1Q8NGP9 310 aa2.53□□□□□ -2
VPS29-205ENST00000548539 OR8U1Q8NH10 309 aa2.53□□□□□ -2
VPS29-205ENST00000548539 COQ8AQ8NI60 647 aa2.53□□□□□ -2
VPS29-205ENST00000548539 C15orf40Q8WUR7 153 aa2.53□□□□□ -2
VPS29-205ENST00000548539 RGP1Q92546 391 aaPredicted RBP2.53□□□□□ -2
VPS29-205ENST00000548539 DCPSQ96C86 337 aaKnown RBP2.53□□□□□ -2
VPS29-205ENST00000548539 C9orf72Q96LT7 481 aa2.53□□□□□ -2
VPS29-205ENST00000548539 FOPNLQ96NB1 174 aa2.53□□□□□ -2
VPS29-205ENST00000548539 ZNF382Q96SR6 550 aa2.53□□□□□ -2
VPS29-205ENST00000548539 SLIRPQ9GZT3 109 aaKnown RBP2.53□□□□□ -2
VPS29-205ENST00000548539 CLSTN2Q9H4D0 955 aa2.53□□□□□ -2
VPS29-205ENST00000548539 RGCCQ9H4X1 137 aa2.53□□□□□ -2
VPS29-205ENST00000548539 ZNF430Q9H8G1 570 aaPredicted RBP2.53□□□□□ -2
VPS29-205ENST00000548539 HMG20AQ9NP66 347 aa2.53□□□□□ -2
VPS29-205ENST00000548539 MYOZ1Q9NP98 299 aaPredicted RBP2.53□□□□□ -2
VPS29-205ENST00000548539 MCUBQ9NWR8 336 aa2.53□□□□□ -2
VPS29-205ENST00000548539 SLC17A7Q9P2U7 560 aa2.53□□□□□ -2
VPS29-205ENST00000548539 UBIAD1Q9Y5Z9 338 aa2.53□□□□□ -2
VPS29-205ENST00000548539 PLEKHG2Q9H7P9 1386 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PCDH11XQ9BZA7 1347 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 IGLV1-50A0A075B6I6 118 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 A6NDN8 102 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 SLC19A2O60779 497 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 HSBP1O75506 76 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 GCM2O75603 506 aaPredicted RBP2.52□□□□□ -2.01
VPS29-205ENST00000548539 IGKV3-11P04433 115 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 OR56A5P0C7T3 313 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 ZNF806P0C7X5 589 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PGA4P0DJD7 388 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PGA3P0DJD8 388 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 RBM34P42696 430 aaKnown RBP2.52□□□□□ -2.01
VPS29-205ENST00000548539 FABP6P51161 128 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 NDUFA8P51970 172 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 DAOAP59103 153 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 TAS2R46P59540 309 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PFN3P60673 137 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 ATP6V0D1P61421 351 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 SAXO2Q658L1 398 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 NTM-AS1Q6ZSK4 140 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 SNX20Q7Z614 316 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 CALHM1Q8IU99 346 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 WDFY1Q8IWB7 410 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PIH1D2Q8WWB5 315 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 ISOC2Q96AB3 205 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 CAMK2N2Q96S95 79 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 HSD17B10Q99714 261 aaKnown RBP2.52□□□□□ -2.01
VPS29-205ENST00000548539 SLC38A10Q9HBR0 1119 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 ZNF355PQ9NSJ1 428 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 ZNRD1Q9P1U0 126 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PEF1Q9UBV8 284 aaKnown RBP2.52□□□□□ -2.01
VPS29-205ENST00000548539 YTHDF2Q9Y5A9 579 aaKnown RBP2.52□□□□□ -2.01
VPS29-205ENST00000548539 COL22A1Q8NFW1 1626 aaPredicted RBP2.52□□□□□ -2.01
VPS29-205ENST00000548539 DENND4AQ7Z401 1863 aa2.52□□□□□ -2.01
VPS29-205ENST00000548539 PALLDQ8WX93 1383 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 IGSF9BQ9UPX0 1349 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 TRAV19A0A0A6YYK7 116 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 A0A0J9YXV3 536 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 LOC100653049A0A140TA62 436 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 GABRR3A8MPY1 467 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 SERPINE3A8MV23 424 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 ZNF99A8MXY4 864 aaPredicted RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 DNASE2O00115 360 aaPredicted RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 B4GALT5O43286 388 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 XRCC2O43543 280 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 MPDU1O75352 247 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 ZNF324O75467 553 aaPredicted RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 KRT34O76011 436 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 FARS2O95363 451 aaKnown RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 CTSLP07711 333 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 SRMP19623 302 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 PMCHP20382 165 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 GABRR2P28476 465 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 PSMD4P55036 377 aaKnown RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 CLDN18P56856 261 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 SYNJ2BPP57105 145 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 RPL23P62829 140 aaKnown RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 CYP24A1Q07973 514 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 LOXL1Q08397 574 aaPredicted RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 SLC39A6Q13433 755 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 KIR2DS1Q14954 304 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 CHRFAM7AQ494W8 412 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 TCEAL5Q5H9L2 206 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 NANOGP8Q6NSW7 305 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 UNC93AQ86WB7 457 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 LGI3Q8N145 548 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 KIF2BQ8N4N8 673 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 OR2L8Q8NGY9 312 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 NAT6Q93015 286 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 TCEAL3Q969E4 200 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 PTX4Q96A99 478 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 FLYWCH2Q96CP2 140 aaKnown RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 SGTBQ96EQ0 304 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 ZNF488Q96MN9 340 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 CSPG4P5Q96PW8 444 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 CALN1Q9BXU9 219 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 OR52D1Q9H346 318 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 TMEM27Q9HBJ8 222 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 MED4Q9NPJ6 270 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 PRSS16Q9NQE7 514 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 DYRK4Q9NR20 520 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms