RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PRAMEF26H0Y7S4 382 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 LILRB5O75023 590 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 TLE3Q04726 772 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 DLX2Q07687 328 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 DEFB133Q30KQ1 61 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 TMPRSS11FQ6ZWK6 438 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM229BQ8NBD8 167 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 NRIP2Q9BQI9 281 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF442Q9H7R0 627 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 TNFSF18Q9UNG2 199 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 TP53BP1Q12888 1972 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 OGG1O15527 345 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 FAM157BP0CG42 384 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 DVL1P1P54792 670 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 PHLDA2Q53GA4 152 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 WBP2NLQ6ICG8 309 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 FAM199XQ6PEV8 388 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 OR51A4Q8NGJ6 313 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 OR2G3Q8NGZ4 309 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 HOXB13Q92826 284 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 SPSB2Q99619 263 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 NUDT22Q9BRQ3 303 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 NXF5Q9H1B4 397 aaKnown RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 MRPS28Q9Y2Q9 187 aaKnown RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 MYOFQ9NZM1 2061 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 RGPD3A6NKT7 1758 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 RGPD4Q7Z3J3 1758 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 CACNA1DQ01668 2161 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 A0A0A6YYD5 115 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 LOC107986453A0A1B0GWG9 222 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 SERINC4A6NH21 518 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 F5H5K5 113 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 ICOSLGO75144 302 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 ZGLP1P0C6A0 271 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 TCTN1Q2MV58 587 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 GLIPR1L1Q6UWM5 242 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 NECAP1Q8NC96 275 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 SYT3Q9BQG1 590 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 RBM24Q9BX46 236 aaKnown RBP12.87□□□□□ -0.35
LIMS1-215ENST00000544547 EPHX3Q9H6B9 360 aa12.87□□□□□ -0.35
LIMS1-215ENST00000544547 CENPVL1A0A0U1RR11 272 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 H0YGG7 62 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 FGF17O60258 216 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 IKZF1Q13422 519 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 MFSD9Q8NBP5 474 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 PGLYRP3Q96LB9 341 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 LRIT1Q9P2V4 623 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM272A0A1B0GTI8 110 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OR2A4O95047 310 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 CRABP1P29762 137 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 GSK3AP49840 483 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM31Q5JXX7 168 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF610Q8N9Z0 462 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 ZFP62Q8NB50 900 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OR5AP2Q8NGF4 316 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OR2A1Q8NGT9 310 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OR2A7Q96R45 310 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 ST6GALNAC2Q9UJ37 374 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 METTL12A8MUP2 240 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 TCAPO15273 167 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 NDUFS6O75380 124 aaKnown RBP12.86□□□□□ -0.35
LIMS1-215ENST00000544547 DPP4P27487 766 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 CX3CR1P49238 355 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 VWA2Q5GFL6 755 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OGFOD3Q6PK18 319 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF695Q8IW36 515 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OR4N2Q8NGD1 307 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 NICN1Q9BSH3 213 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 NMNAT2Q9BZQ4 307 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 ASB17Q8WXJ9 295 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 TOX2Q96NM4 488 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 LMF2Q9BU23 707 aaKnown RBP12.86□□□□□ -0.35
LIMS1-215ENST00000544547 ZBP1Q9H171 429 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OPA3Q9H6K4 179 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 DUSP22Q9NRW4 184 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 LPAR3Q9UBY5 353 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 OR52A1Q9UKL2 312 aa12.86□□□□□ -0.35
LIMS1-215ENST00000544547 C19orf53Q9UNZ5 99 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-215ENST00000544547 KIR2DS5A0A0G2JLQ3 304 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 A0A0G2JNG1 304 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 A0A0J9YY10 115 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 KIR2DS3K7RE56 304 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ACAA1P09110 424 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-215ENST00000544547 GJA4P35212 333 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 NANOS3P60323 173 aaKnown RBP12.85□□□□□ -0.35
LIMS1-215ENST00000544547 KIR2DS5Q14953 304 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 TOMM34Q15785 309 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-215ENST00000544547 METRNLQ641Q3 311 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 DCXRQ7Z4W1 244 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 INTS12Q96CB8 462 aaKnown RBP12.85□□□□□ -0.35
LIMS1-215ENST00000544547 REG4Q9BYZ8 158 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-215ENST00000544547 A6NCN8 305 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 CRHP06850 196 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 DUSP2Q05923 314 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 WDR38Q5JTN6 314 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 SLC22A24Q8N4F4 322 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ASB13Q8WXK3 278 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 RAB39BQ96DA2 213 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ZMIZ1Q9ULJ6 1067 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms