RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ALOX5APP20292 161 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 ACHEP22303 614 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 TMEM33P57088 247 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 APOFQ13790 326 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 EIF2B1Q14232 305 aaKnown RBP11.02□□□□□ -0.65
VPS28-216ENST00000533806 GGTLC2Q14390 218 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 TMEM249Q2WGJ8 235 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 SNAI3Q3KNW1 292 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 KLHL12Q53G59 568 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 SPRNQ5BIV9 151 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 ZNF454Q8N9F8 522 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 DIRC2Q96SL1 478 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 KLHDC2Q9Y2U9 406 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 HIVEP2P31629 2446 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 CR1P17927 2039 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 NAV3Q8IVL0 2385 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 IQCF6A8MYZ5 107 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 EI24O14681 340 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 SPRY3O43610 288 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 CD5LO43866 347 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 TIMM8AO60220 97 aaPredicted RBP11.01□□□□□ -0.65
VPS28-216ENST00000533806 LCATP04180 440 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 SLC15A1P46059 708 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 ALDH3A2P51648 485 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 PRKXP51817 358 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 GRB2P62993 217 aaKnown RBP11.01□□□□□ -0.65
VPS28-216ENST00000533806 ZNF92Q03936 586 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 ZMAT1Q5H9K5 638 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 NXNL2Q5VZ03 156 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 OR2T2Q6IF00 324 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 Q71RC1 249 aaPredicted RBP11.01□□□□□ -0.65
VPS28-216ENST00000533806 MEPCEQ7L2J0 689 aaKnown RBP11.01□□□□□ -0.65
VPS28-216ENST00000533806 SLC16A9Q7RTY1 509 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 PQLC1Q8N2U9 271 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 CBR4Q8N4T8 237 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 TCEANCQ8N8B7 351 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 OR8G5Q8NG78 346 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 SPSB4Q96A44 273 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 SLC29A1Q99808 456 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 SLC30A2Q9BRI3 323 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 COPS4Q9BT78 406 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 REPIN1Q9BWE0 567 aaKnown RBP11.01□□□□□ -0.65
VPS28-216ENST00000533806 PRRG3Q9BZD7 231 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 YIPF3Q9GZM5 350 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 TOR3AQ9H497 397 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 ZNF275Q9NSD4 429 aaPredicted RBP11.01□□□□□ -0.65
VPS28-216ENST00000533806 CENPMQ9NSP4 180 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 HAO2Q9NYQ3 351 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 CACNG2Q9Y698 323 aa11.01□□□□□ -0.65
VPS28-216ENST00000533806 SVEP1Q4LDE5 3571 aa11□□□□□ -0.65
VPS28-216ENST00000533806 ABCA1O95477 2261 aa11□□□□□ -0.65
VPS28-216ENST00000533806 IGHV1-69-2A0A0G2JMI3 117 aa11□□□□□ -0.65
VPS28-216ENST00000533806 PRR32B1ATL7 298 aa11□□□□□ -0.65
VPS28-216ENST00000533806 LYNP07948 512 aa11□□□□□ -0.65
VPS28-216ENST00000533806 IGHV4-31P0DP07 118 aa11□□□□□ -0.65
VPS28-216ENST00000533806 NAA10P41227 235 aaPredicted RBP11□□□□□ -0.65
VPS28-216ENST00000533806 HCCSP53701 268 aa11□□□□□ -0.65
VPS28-216ENST00000533806 TRIP10Q15642 601 aa11□□□□□ -0.65
VPS28-216ENST00000533806 CARTPTQ16568 116 aa11□□□□□ -0.65
VPS28-216ENST00000533806 TSTQ16762 297 aaKnown RBP11□□□□□ -0.65
VPS28-216ENST00000533806 GLYATL3Q5SZD4 288 aa11□□□□□ -0.65
VPS28-216ENST00000533806 USP51Q70EK9 711 aa11□□□□□ -0.65
VPS28-216ENST00000533806 SPATC1Q76KD6 591 aa11□□□□□ -0.65
VPS28-216ENST00000533806 C1orf159Q96HA4 380 aa11□□□□□ -0.65
VPS28-216ENST00000533806 HRASLS5Q96KN8 279 aa11□□□□□ -0.65
VPS28-216ENST00000533806 IL4I1Q96RQ9 567 aa11□□□□□ -0.65
VPS28-216ENST00000533806 SAP30LQ9HAJ7 183 aa11□□□□□ -0.65
VPS28-216ENST00000533806 DECR2Q9NUI1 292 aa11□□□□□ -0.65
VPS28-216ENST00000533806 ZNF319Q9P2F9 582 aa11□□□□□ -0.65
VPS28-216ENST00000533806 C2CD3Q4AC94 2353 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 CHD3Q12873 2000 aaKnown RBP10.99□□□□□ -0.65
VPS28-216ENST00000533806 WNT9BO14905 357 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 MLNRO43193 412 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 SLC2A1P11166 492 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 SELEP16581 610 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 HOXB4P17483 251 aaPredicted RBP10.99□□□□□ -0.65
VPS28-216ENST00000533806 RPS7P62081 194 aaKnown RBP10.99□□□□□ -0.65
VPS28-216ENST00000533806 ROM1Q03395 351 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 MALLQ13021 153 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 SLC25A30Q5SVS4 291 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 DEGS2Q6QHC5 323 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 OR8J1Q8NGP2 316 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 OR2AE1Q8NHA4 323 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 THEM6Q8WUY1 208 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 HPS1Q92902 700 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 UBE2FQ969M7 185 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 ZNF582Q96NG8 517 aaPredicted RBP10.99□□□□□ -0.65
VPS28-216ENST00000533806 MBOAT4Q96T53 435 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 SOX7Q9BT81 388 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 RIBC2Q9H4K1 309 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 IL19Q9UHD0 177 aa10.99□□□□□ -0.65
VPS28-216ENST00000533806 SONP18583 2426 aaKnown RBP10.99□□□□□ -0.65
VPS28-216ENST00000533806 LRP5LA4QPB2 252 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 SLC22A31A6NKX4 558 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 H0YL77 283 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 DLGAP1O14490 977 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 CDC14BO60729 498 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 APOC1P02654 83 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 H2BFMP0C1H6 154 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 IL2RGP31785 369 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms