RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 H2AFY2Q9P0M6 372 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-209ENST00000532725 CGGBP1Q9UFW8 167 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-209ENST00000532725 TLN2Q9Y4G6 2542 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 C5orf63A6NC05 138 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 SPRY3O43610 288 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 LY6G6DO95868 133 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 NAA10P41227 235 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-209ENST00000532725 NR4A2P43354 598 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 RAD23AP54725 363 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 GRB2P62993 217 aaKnown RBP16.9■□□□□ 0.3
CPSF1-209ENST00000532725 LOXL1Q08397 574 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-209ENST00000532725 RIN1Q13671 783 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 GK2Q14410 553 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-209ENST00000532725 CARTPTQ16568 116 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 TSTQ16762 297 aaKnown RBP16.9■□□□□ 0.3
CPSF1-209ENST00000532725 SNAI3Q3KNW1 292 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 ZIK1Q3SY52 487 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-209ENST00000532725 OR2T2Q6IF00 324 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 Q6ZR03 302 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 STMN2Q93045 179 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 HRASLS5Q96KN8 279 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 YIPF3Q9GZM5 350 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 TOR3AQ9H497 397 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 ZDHHC8Q9ULC8 765 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 KLHDC2Q9Y2U9 406 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 ORC6Q9Y5N6 252 aa16.9■□□□□ 0.3
CPSF1-209ENST00000532725 LYNP07948 512 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 SLC6A9P48067 706 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 GGTLC2Q14390 218 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 FAM209AQ5JX71 171 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 LCN1P1Q5VSP4 162 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 PRSS45Q7RTY3 260 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 ZNF540Q8NDQ6 660 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 OR8J1Q8NGP2 316 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 TRUB1Q8WWH5 349 aaKnown RBP16.89■□□□□ 0.29
CPSF1-209ENST00000532725 YIPF5Q969M3 257 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 UBE2FQ969M7 185 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 PIMREGQ9BSJ6 248 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 DECR2Q9NUI1 292 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 HAO2Q9NYQ3 351 aa16.89■□□□□ 0.29
CPSF1-209ENST00000532725 ABCA1O95477 2261 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 SLC22A31A6NKX4 558 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 CD55P08174 381 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 USF1P22415 310 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-209ENST00000532725 CRYBB2P43320 205 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 MALLQ13021 153 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 ZMAT1Q5H9K5 638 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 CLEC9AQ6UXN8 241 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 ZNF283Q8N7M2 679 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 OR8G5Q8NG78 346 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 EME1Q96AY2 570 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 DIRC2Q96SL1 478 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 MBOAT4Q96T53 435 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 REPIN1Q9BWE0 567 aaKnown RBP16.88■□□□□ 0.29
CPSF1-209ENST00000532725 BPESC1Q9GZL8 116 aa16.88■□□□□ 0.29
CPSF1-209ENST00000532725 IQCF6A8MYZ5 107 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 RP2O75695 350 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 APOC1P02654 83 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 MRPL3P09001 348 aaKnown RBP16.87■□□□□ 0.29
CPSF1-209ENST00000532725 H2BFMP0C1H6 154 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 SLC2A1P11166 492 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 ACHEP22303 614 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 CX3CR1P49238 355 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 TMEM33P57088 247 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 CDC42P60953 191 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 ZNF92Q03936 586 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 KRTAP1-1Q07627 177 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 SPRNQ5BIV9 151 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 USP51Q70EK9 711 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 GID4Q8IVV7 300 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 OR5AS1Q8N127 324 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 ZNF582Q96NG8 517 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-209ENST00000532725 CHODLQ9H9P2 273 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 ADGRL4Q9HBW9 690 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 LAMP5Q9UJQ1 280 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 CR1P17927 2039 aa16.87■□□□□ 0.29
CPSF1-209ENST00000532725 SETD2Q9BYW2 2564 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-209ENST00000532725 CDC14BO60729 498 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 LILRA1O75019 489 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 ANPEPP15144 967 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 SELEP16581 610 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 HSD11B1P28845 292 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 PRSS12P56730 875 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 SLC25A30Q5SVS4 291 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 GLYATL3Q5SZD4 288 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 PGAP1Q75T13 922 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-209ENST00000532725 SGK3Q96BR1 496 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 CNN2Q99439 309 aaKnown RBP16.86■□□□□ 0.29
CPSF1-209ENST00000532725 SLC30A2Q9BRI3 323 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 SAP30LQ9HAJ7 183 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 ZNF275Q9NSD4 429 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-209ENST00000532725 WARS2Q9UGM6 360 aaKnown RBP16.86■□□□□ 0.29
CPSF1-209ENST00000532725 COPS3Q9UNS2 423 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 N6AMT1Q9Y5N5 214 aa16.86■□□□□ 0.29
CPSF1-209ENST00000532725 IGHV4-61A0A0C4DH41 118 aa16.85■□□□□ 0.29
CPSF1-209ENST00000532725 IGHV1-69-2A0A0G2JMI3 117 aa16.85■□□□□ 0.29
CPSF1-209ENST00000532725 A0A1B0GWJ7 208 aa16.85■□□□□ 0.29
CPSF1-209ENST00000532725 PRR32B1ATL7 298 aa16.85■□□□□ 0.29
CPSF1-209ENST00000532725 TPD52L2O43399 206 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms