RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 OR8B3Q8NGG8 313 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 Q8TCH9 128 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 NSMCE2Q96MF7 247 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 OR8B2Q96RD0 313 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 HCAR1Q9BXC0 346 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 DCAF13Q9NV06 445 aaKnown RBP9.48□□□□□ -0.89
VPS28-214ENST00000531032 TMEM100Q9NV29 134 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 B9D1Q9UPM9 204 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 IGHV3OR16-10A0A075B7F0 116 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 PHYHO14832 338 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ARPC2O15144 300 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ARPC3O15145 178 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 DIRAS1O95057 198 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 PPP1R3DO95685 299 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 HLA-DPB1P04440 258 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ACSM4P0C7M7 580 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 HSD17B1P14061 328 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 FPR3P25089 353 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 PITPNBP48739 271 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 CENPAP49450 140 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 MNAT1P51948 309 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 RAD23AP54725 363 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 SMIM11AP58511 58 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ECH1Q13011 328 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 MAB21L1Q13394 359 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 GK2Q14410 553 aaPredicted RBP9.47□□□□□ -0.89
VPS28-214ENST00000531032 FAM201AQ5SY85 155 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 SLC18B1Q6NT16 456 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 DCDC5Q6ZRR9 648 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.47□□□□□ -0.89
VPS28-214ENST00000531032 JAZF1Q86VZ6 243 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 DEFB107AQ8IZN7 70 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 FAM86B1Q8N7N1 296 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 OR52J3Q8NH60 311 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 FANK1Q8TC84 345 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ERGIC1Q969X5 290 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ERMAPQ96PL5 475 aaPredicted RBP9.47□□□□□ -0.89
VPS28-214ENST00000531032 NMNAT3Q96T66 252 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 ATF6BQ99941 703 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 SLITRK2Q9H156 845 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 PRDM13Q9H4Q3 707 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 WDR76Q9H967 626 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 PNRC2Q9NPJ4 139 aaKnown RBP9.47□□□□□ -0.89
VPS28-214ENST00000531032 ARL8BQ9NVJ2 186 aa9.47□□□□□ -0.89
VPS28-214ENST00000531032 SOX21Q9Y651 276 aaPredicted RBP9.47□□□□□ -0.89
VPS28-214ENST00000531032 MDFIC2A0A1B0GVS7 189 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 GADD45GO95257 159 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 HIST1H1CP16403 213 aaKnown RBP9.46□□□□□ -0.9
VPS28-214ENST00000531032 SLC6A6P31641 620 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 GGT2P36268 569 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 CD200P41217 278 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 PRSS12P56730 875 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 DBPQ10586 325 aaPredicted RBP9.46□□□□□ -0.9
VPS28-214ENST00000531032 RFX4Q33E94 735 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 CLEC12AQ5QGZ9 265 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 WDR25Q64LD2 544 aaPredicted RBP9.46□□□□□ -0.9
VPS28-214ENST00000531032 C16orf87Q6PH81 154 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 ZNF841Q6ZN19 808 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 ZBTB46Q86UZ6 589 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 LINC00346Q8IVM7 164 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 FITM2Q8N6M3 262 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 PYURFQ96I23 114 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 CDRT15Q96T59 188 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 PITX2Q99697 317 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 NUDT16L1Q9BRJ7 211 aaKnown RBP9.46□□□□□ -0.9
VPS28-214ENST00000531032 CDADC1Q9BWV3 514 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 OR52D1Q9H346 318 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 GORASP2Q9H8Y8 452 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 SRA1Q9HD15 236 aaKnown RBP9.46□□□□□ -0.9
VPS28-214ENST00000531032 RPRD1BQ9NQG5 326 aaKnown RBP9.46□□□□□ -0.9
VPS28-214ENST00000531032 CLN8Q9UBY8 286 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 CYB5R1Q9UHQ9 305 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 MMP24Q9Y5R2 645 aa9.46□□□□□ -0.9
VPS28-214ENST00000531032 C22orf46C9J442 243 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 F5H5K5 113 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 FAM20BO75063 409 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 RENP00797 406 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 SEMG1P04279 462 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 FABP3P05413 133 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 IRF2P14316 349 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 PSMB10P40306 273 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 BPIFB3P59826 476 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 TRAP1Q12931 704 aaKnown RBP9.45□□□□□ -0.9
VPS28-214ENST00000531032 MALLQ13021 153 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 SLC36A3Q495N2 470 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 LYPD2Q6UXB3 125 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 TREML4Q6UXN2 200 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 BRD3OSQ6XYD6 125 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 SPATC1Q76KD6 591 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 PIGWQ7Z7B1 504 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 NAA40Q86UY6 237 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 CCDC197Q8NCU1 140 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 OR10S1Q8NGN2 331 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 OR11L1Q8NGX0 322 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 OR2AJ1Q8NGZ0 328 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 OR4K13Q8NH42 304 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 TAF15Q92804 592 aaKnown RBP eCLIP9.45□□□□□ -0.9
VPS28-214ENST00000531032 TMIGD2Q96BF3 282 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 KCNG2Q9UJ96 466 aa9.45□□□□□ -0.9
VPS28-214ENST00000531032 TMCC3Q9ULS5 477 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms