RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.18■□□□□ 0.5
VPS28-209ENST00000528142 NAA40Q86UY6 237 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 DUSP18Q8NEJ0 188 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 SMIM4Q8WVI0 70 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 FOXB1Q99853 325 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 LINC00470Q9BZP3 86 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 RNF122Q9H9V4 155 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 GPR84Q9NQS5 396 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 RHBDD3Q9Y3P4 386 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 C5orf63A6NC05 138 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 SULT1B1O43704 296 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 MRPL33O75394 65 aaKnown RBP18.17■□□□□ 0.5
VPS28-209ENST00000528142 IGLV3-1P01715 115 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 CDK2P24941 298 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 POU3F4P49335 361 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 C1orf100Q5SVJ3 147 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 GLYATL3Q5SZD4 288 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 TSPO2Q5TGU0 170 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 ABHD12BQ7Z5M8 362 aaPredicted RBP18.17■□□□□ 0.5
VPS28-209ENST00000528142 TUSC5Q8IXB3 177 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 NKAIN3Q8N8D7 197 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 ENKURQ8TC29 256 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 CHAC2Q8WUX2 184 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 NKX3-1Q99801 234 aaPredicted RBP18.17■□□□□ 0.5
VPS28-209ENST00000528142 BCO1Q9HAY6 547 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 PLEK2Q9NYT0 353 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 EMC3Q9P0I2 261 aa18.17■□□□□ 0.5
VPS28-209ENST00000528142 CGGBP1Q9UFW8 167 aaPredicted RBP18.17■□□□□ 0.5
VPS28-209ENST00000528142 TRGV5A0A0B4J1U4 118 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 LOC100289279A0A1B0GTE1 492 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 ZNF724A8MTY0 619 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 F5H5K5 113 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 BOLA2-SMG1P6H3BVE0 249 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 TPPPO94811 219 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 TMIGD3P0DMS9 266 aaPredicted RBP18.16■□□□□ 0.5
VPS28-209ENST00000528142 B4GALT1P15291 398 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 HTR2CP28335 458 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 EFNB2P52799 333 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 GPR176Q14439 515 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 C3AR1Q16581 482 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 OR6M1Q8NGM8 313 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 SLCO5A1Q9H2Y9 848 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 SLC17A5Q9NRA2 495 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 PARPBPQ9NWS1 579 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 SPRR3Q9UBC9 169 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 CEACAM4O75871 244 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 CPN1P15169 458 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 CRYGSP22914 178 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 CD300CQ08708 224 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 RAB35Q15286 201 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 DEFB109BQ30KR1 87 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 ANKRD16Q6P6B7 361 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 SLC22A24Q8N4F4 322 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 OR1M1Q8NGA1 313 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 OR5D14Q8NGL3 314 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 SLC7A6Q92536 515 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 WDYHV1Q96HA8 205 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 LDAHQ9H6V9 325 aa18.16■□□□□ 0.5
VPS28-209ENST00000528142 SYNGR3O43761 229 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 BDKRB2P30411 391 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 GNALP38405 381 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 SRP9P49458 86 aaKnown RBP18.15■□□□□ 0.5
VPS28-209ENST00000528142 RNASE12Q5GAN4 147 aaKnown RBP18.15■□□□□ 0.5
VPS28-209ENST00000528142 TMEM69Q5SWH9 247 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 DOK3Q7L591 496 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 BIVMQ86UB2 503 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 FOXRED1Q96CU9 486 aaPredicted RBP18.15■□□□□ 0.5
VPS28-209ENST00000528142 PGAM5Q96HS1 289 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 LYZL4Q96KX0 146 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 SCNM1Q9BWG6 230 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 KCNK15Q9H427 330 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 PLEKHA1Q9HB21 404 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 TMEM138Q9NPI0 162 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 SLC7A10Q9NS82 523 aa18.15■□□□□ 0.5
VPS28-209ENST00000528142 TMEM272A0A1B0GTI8 110 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 EFSO43281 561 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 SGCEO43556 437 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 CTAG2O75638 210 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 DBHP09172 617 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 TAS2R20P59543 309 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 PMP22Q01453 160 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 SCRN3Q0VDG4 424 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 CARTPTQ16568 116 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 NRN1LQ496H8 165 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 GLCCI1Q86VQ1 547 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 OR14K1Q8NGZ2 314 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 PRRG4Q9BZD6 226 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 AUNIPQ9H7T9 357 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 RNF121Q9H920 327 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 CALHM2Q9HA72 323 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 KCNMB2Q9Y691 235 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 CACNG2Q9Y698 323 aa18.14■□□□□ 0.5
VPS28-209ENST00000528142 NCOA6Q14686 2063 aaPredicted RBP18.14■□□□□ 0.49
VPS28-209ENST00000528142 A0A0U1RQV5 110 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 FAM240BA0A1B0GVZ2 78 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 GABARAPH6UMI1 98 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 RPL36A-HNRNPH2H7BZ11 118 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 M0R135 149 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 TFECO14948 347 aaPredicted RBP18.14■□□□□ 0.49
VPS28-209ENST00000528142 LDLRAD4O15165 306 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms