RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 OR51L1Q8NGJ5 315 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 OR10S1Q8NGN2 331 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 OR2V2Q96R30 315 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 SLC30A2Q9BRI3 323 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 COPS4Q9BT78 406 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 OPA3Q9H6K4 179 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 WDR76Q9H967 626 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 HIF1ANQ9NWT6 349 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 PPP1R3CQ9UQK1 317 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 NPTNQ9Y639 398 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 APOC1P02654 83 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 GYPBP06028 91 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SLC6A9P48067 706 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 GRB2P62993 217 aaKnown RBP17.43■□□□□ 0.38
VPS28-206ENST00000526734 GK2Q14410 553 aaPredicted RBP17.43■□□□□ 0.38
VPS28-206ENST00000526734 LINC01590Q5TEZ4 76 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SHQ1Q6PI26 577 aaKnown RBP17.43■□□□□ 0.38
VPS28-206ENST00000526734 PGAP1Q75T13 922 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 RHOUQ7L0Q8 258 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SHFQ7M4L6 423 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 MRPL21Q7Z2W9 205 aaKnown RBP17.43■□□□□ 0.38
VPS28-206ENST00000526734 OR5AS1Q8N127 324 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SPICQ8N5J4 248 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 ZNF511Q8NB15 262 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 ITLN1Q8WWA0 313 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 ZNRF4Q8WWF5 429 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SLAMF6Q96DU3 332 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 INTS14Q96SY0 518 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 KCNJ15Q99712 375 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SLC22A4Q9H015 551 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 TOR3AQ9H497 397 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 SP140LQ9H930 580 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 MARCH7Q9H992 704 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 TMEM100Q9NV29 134 aa17.43■□□□□ 0.38
VPS28-206ENST00000526734 ISPDA4D126 451 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 PRR23D1E9PI22 279 aaPredicted RBP17.42■□□□□ 0.38
VPS28-206ENST00000526734 ZNF593O00488 134 aaPredicted RBP17.42■□□□□ 0.38
VPS28-206ENST00000526734 GLCEO94923 617 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 PRR23D2P0DMB1 279 aaPredicted RBP17.42■□□□□ 0.38
VPS28-206ENST00000526734 CPT2P23786 658 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 POU1F1P28069 291 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 GSTT1P30711 240 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 SRP14P37108 136 aaKnown RBP17.42■□□□□ 0.38
VPS28-206ENST00000526734 RPS27P42677 84 aaKnown RBP17.42■□□□□ 0.38
VPS28-206ENST00000526734 SCGB2A2Q13296 93 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 GINS1Q14691 196 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 TAF13Q15543 124 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 TMEM155Q4W5P6 130 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 LYPD4Q6UWN0 246 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 IL17RELQ6ZVW7 336 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 IQCF1Q8N6M8 205 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 CELF2-AS1Q8N7Q2 184 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 ST7LQ8TDW4 575 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 MEGF10Q96KG7 1140 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 ATRQ13535 2644 aa17.42■□□□□ 0.38
VPS28-206ENST00000526734 TANC2Q9HCD6 1990 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 PRODHO43272 600 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 IGHV2-70P01814 119 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 CLUP10909 449 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 GATA3P23771 443 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 ZNF181Q2M3W8 571 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 CXXC5Q7LFL8 322 aaKnown RBP17.41■□□□□ 0.38
VPS28-206ENST00000526734 TMEM158Q8WZ71 300 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 SLCO4A1Q96BD0 722 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 PLEKHA8Q96JA3 519 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 LPAR2Q9HBW0 351 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 SLC25A19Q9HC21 320 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 KIF17Q9P2E2 1029 aa17.41■□□□□ 0.38
VPS28-206ENST00000526734 FAM183AA6NL82 134 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 J3QLI3 93 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 XRCC2O43543 280 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 BTG1P62324 171 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 CDK5Q00535 292 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 SPRNQ5BIV9 151 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 C1orf87Q8N0U7 546 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 MUC20Q8N307 709 aaPredicted RBP17.4■□□□□ 0.38
VPS28-206ENST00000526734 PARP8Q8N3A8 854 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 KLHL36Q8N4N3 616 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 BHLHE23Q8NDY6 225 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 OR10AD1Q8NGE0 317 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 OR6N2Q8NGY6 317 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 SPRYD4Q8WW59 207 aaPredicted RBP17.4■□□□□ 0.38
VPS28-206ENST00000526734 ERGIC1Q969X5 290 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 OTULINQ96BN8 352 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 MDFIQ99750 246 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 PRRG3Q9BZD7 231 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 GCM1Q9NP62 436 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 CENPMQ9NSP4 180 aa17.4■□□□□ 0.38
VPS28-206ENST00000526734 A0A0G2JMP0 313 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 A0A0X1KG70 313 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 LRRC30A6NM36 301 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 FSTL3O95633 263 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 PNPP00491 289 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 PSKH1P11801 424 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 GATA4P43694 442 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 MMP16P51512 607 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 RAD23AP54725 363 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 EIF2B1Q14232 305 aaKnown RBP17.39■□□□□ 0.37
VPS28-206ENST00000526734 SLC35D3Q5M8T2 416 aa17.39■□□□□ 0.37
VPS28-206ENST00000526734 NAA40Q86UY6 237 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms