RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 OR4D10Q8NGI6 311 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 GPBAR1Q8TDU6 330 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 TMED6Q8WW62 240 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 WDFY2Q96P53 400 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 MYO16Q9Y6X6 1858 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 BPNT1O95861 308 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 CTLA4P16410 223 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ACHEP22303 614 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ENPP1P22413 925 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 AVPR2P30518 371 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 EIF1P41567 113 aaKnown RBP10.55□□□□□ -0.72
SYNPO-204ENST00000519664 SSTP61278 116 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 B3GNTL1Q67FW5 361 aaPredicted RBP10.55□□□□□ -0.72
SYNPO-204ENST00000519664 NKAIN3Q8N8D7 197 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 OTOSQ8NHW6 89 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 LRP12Q9Y561 859 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 DOCK8Q8NF50 2099 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 OR5H14A6NHG9 310 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ERVH48-1M5A8F1 160 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ITGB2P05107 769 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 MEOX2P50222 304 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 TAS2R46P59540 309 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF85Q03923 595 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 RNF212Q495C1 297 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 C1orf53Q5VUE5 145 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 OR10AC1Q8NH08 325 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 PSMF1Q92530 271 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ANKRD9Q96BM1 317 aaPredicted RBP10.55□□□□□ -0.72
SYNPO-204ENST00000519664 OR5V1Q9UGF6 321 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 A0A1W2PQF6 199 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 LANCL1O43813 399 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ANGPTL7O43827 346 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 MMP15P51511 669 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 EMC4Q5J8M3 183 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 C2CD4CQ8TF44 421 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 TRAV1-2A0A0B4J238 106 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 C4orf51C9J302 202 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 CXCL13O43927 109 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PIAS2O75928 621 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 IFNA2P01563 188 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OR4E1P0C645 316 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 NME1P15531 152 aaKnown RBP10.54□□□□□ -0.72
SYNPO-204ENST00000519664 CXCL3P19876 107 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 IRF3Q14653 427 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PDCD1Q15116 288 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 VHLLQ6RSH7 139 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 C11orf40Q8WZ69 217 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 TMEM231Q9H6L2 316 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF286AQ9HBT8 521 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OBP2BQ9NPH6 170 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 TMEM184BQ9Y519 407 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-204ENST00000519664 FRG2CA6NGY1 282 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 BHLHE40O14503 412 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 ARPC3O15145 178 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PHF1O43189 567 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-204ENST00000519664 SLC34A2O95436 690 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PCK2Q16822 640 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF684Q5T5D7 378 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 TMEM91Q6ZNR0 172 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 DGAT2L6Q6ZPD8 337 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OR10G3Q8NGC4 313 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OR5L1Q8NGL2 311 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OR1N1Q8NGS0 311 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 SDSLQ96GA7 329 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OR8B4Q96RC9 309 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PBDC1Q9BVG4 233 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 SLCO5A1Q9H2Y9 848 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 TAS2R5Q9NYW4 299 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 BOKQ9UMX3 212 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-204ENST00000519664 GREB1Q4ZG55 1949 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 CYR61O00622 381 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 FAHP16930 419 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 SERPINF1P36955 418 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 EGR3Q06889 387 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 WDR88Q6ZMY6 472 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 MAML2Q8IZL2 1156 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-204ENST00000519664 OR9K2Q8NGE7 335 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 ALKBH3Q96Q83 286 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-204ENST00000519664 SLX1AQ9BQ83 275 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PBOV1Q9GZY1 135 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 PIGMQ9H3S5 423 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 ENY2Q9NPA8 101 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 ANK1P16157 1881 aa10.54□□□□□ -0.72
SYNPO-204ENST00000519664 EIF1BO60739 113 aaKnown RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CER1O95813 267 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CBR1P16152 277 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CYB561P49447 251 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF136P52737 540 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 PLA2G7Q13093 441 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF770Q6IQ21 691 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 GUSBP11Q6P575 273 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 SYT13Q7L8C5 426 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MARC2Q969Z3 335 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MVB12AQ96EY5 273 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 USB1Q9BQ65 265 aaKnown RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 PIGQQ9BRB3 760 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 S1PR5Q9H228 398 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 GDF2Q9UK05 429 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 EXOGQ9Y2C4 368 aaKnown RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 LTBP1Q14766 1721 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms