RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	BLOC1S1	P78537	153 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	SPCS2	Q15005	226 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144		Q499Y3	187 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	POLDIP2	Q9Y2S7	368 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	KIAA2026	Q5HYC2	2103 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	TUBAL3	A6NHL2	446 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	AADAC	P22760	399 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	CPT2	P23786	658 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	ABHD11	Q8NFV4	315 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	BSCL2	Q96G97	398 aa	Predicted RBP	13	□□□□□ -0.33
TRIO-222	ENST00000515144	TEAD3	Q99594	435 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	MED17	Q9NVC6	651 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	HMX2	A2RU54	273 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	NUDT19	A8MXV4	375 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	ALDH3B1	P43353	468 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	C1orf53	Q5VUE5	145 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	DOK3	Q7L591	496 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	MDGA2	Q7Z553	956 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	OR6S1	Q8NH40	331 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	PTPRD	P23468	1912 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144		A0A1B0GTL3	188 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	UBL3	O95164	117 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	S100A7A	Q86SG5	101 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	OR51J1	Q9H342	316 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	RPS10P5	Q9NQ39	176 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	CACNA1D	Q01668	2161 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144		A8MXE2	369 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	C5orf67	F2Z3F1	127 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	SDCBP	O00560	298 aa	Predicted RBP	13	□□□□□ -0.33
TRIO-222	ENST00000515144	NTN1	O95631	604 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	ZNF133	P52736	654 aa	Predicted RBP	13	□□□□□ -0.33
TRIO-222	ENST00000515144	DLEU7	Q6UYE1	221 aa		13	□□□□□ -0.33
TRIO-222	ENST00000515144	ALG1L2	C9J202	215 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	GLA	P06280	429 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	CA6	P23280	308 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	TNFSF8	P32971	234 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	ALDH3B2	P48448	385 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	CCR6	P51684	374 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	OR10A3	P58181	314 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	AARD	Q4LEZ3	155 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	THNSL2	Q86YJ6	484 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	OR51A4	Q8NGJ6	313 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	OR51A2	Q8NGJ7	313 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	GPBAR1	Q8TDU6	330 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	S1PR5	Q9H228	398 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	NOTO	A8MTQ0	251 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	MED6	O75586	246 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	ZNF793	Q6ZN11	406 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	ISG20L2	Q9H9L3	353 aa	Known RBP	12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	GMEB1	Q9Y692	573 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	DEFB108A	A8MXU0	73 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	SYT5	O00445	386 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	LRRC3B	Q96PB8	259 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	PARP12	Q9H0J9	701 aa	Known RBP	12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	SLC22A13	Q9Y226	551 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	HDGFL3	Q9Y3E1	203 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	HELZ	P42694	1942 aa	Known RBP	12.99	□□□□□ -0.33
TRIO-222	ENST00000515144		A0A087WZY1	265 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144		K7EPK0	472 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	CTDSP2	O14595	271 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	FAH	P16930	419 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	SPI1	P17947	270 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	YIF1B	Q5BJH7	314 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	SLC25A26	Q70HW3	274 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	FAM71E2	Q8N5Q1	922 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	BPIFC	Q8NFQ6	507 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	CMTM2	Q8TAZ6	248 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	COX7A1	P24310	79 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	APEX1	P27695	318 aa	Known RBP	12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	S100A7	P31151	101 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	WDR5B	Q86VZ2	330 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	PARP16	Q8N5Y8	322 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	PBOV1	Q9GZY1	135 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	RAB22A	Q9UL26	194 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	C7orf72	A4D263	438 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	PCBP3	P57721	371 aa	Known RBP	12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	ZNF74	Q16587	644 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	ZNF626	Q68DY1	528 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	TFAP2E	Q6VUC0	442 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	CATSPERD	Q86XM0	798 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	NOXO1	Q8NFA2	376 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	OPALIN	Q96PE5	141 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	PLA2G12A	Q9BZM1	189 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	ZCCHC4	Q9H5U6	513 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	MTCH1	Q9NZJ7	389 aa		12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	CNOT11	Q9UKZ1	510 aa	Known RBP	12.99	□□□□□ -0.33
TRIO-222	ENST00000515144	FTH1P19	P0C7X4	201 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	HNRNPF	P52597	415 aa	Known RBP	12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	SORD	Q00796	357 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	TAGLN	Q01995	201 aa	Known RBP	12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	SLC30A7	Q8NEW0	376 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	KIRREL1	Q96J84	757 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	SLC25A37	Q9NYZ2	338 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	LRRC37A	A6NMS7	1700 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	SPINT1	O43278	529 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	NAGA	P17050	411 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	GALNS	P34059	522 aa		12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	RPL34	P49207	117 aa	Known RBP	12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	ELL	P55199	621 aa	Predicted RBP	12.98	□□□□□ -0.33
TRIO-222	ENST00000515144	SLC35D3	Q5M8T2	416 aa		12.98	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms