RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SLC22A2O15244 555 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ZIC3O60481 467 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 RAMP1O60894 148 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 RAD51DO75771 328 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 YIF1AO95070 293 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 LPLP06858 475 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 THBS1P07996 1170 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GLI4P10075 376 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 LIPAP38571 399 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 RPL29P47914 159 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 NUTF2P61970 127 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 SLAQ13239 276 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 LAPTM4AQ15012 233 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GCNT6Q5T4J0 391 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 BCL2L15Q5TBC7 163 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GPR137CQ8N3F9 429 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GLYATL2Q8WU03 294 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ELMOD3Q96FG2 381 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 WFDC6Q9BQY6 131 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 LYVE1Q9Y5Y7 322 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 SVEP1Q4LDE5 3571 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 DHRS12A0PJE2 317 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 RNASET2O00584 256 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF195O14628 629 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 SCGNO76038 276 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 NKX2-2O95096 273 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GSTP1P09211 210 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 MYF6P23409 242 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 COMPP49747 757 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 MRPS10P82664 201 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ATRQ13535 2644 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 LARS2Q15031 903 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 CASP12Q6UXS9 341 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GDF7Q7Z4P5 450 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 LGI4Q8N135 537 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF610Q8N9Z0 462 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 PLPP7Q8NBV4 271 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 HGDQ93099 445 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 FAM162AQ96A26 154 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 GPN1Q9HCN4 374 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 SDR39U1Q9NRG7 319 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 SERINC1Q9NRX5 453 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 PTTG3PQ9NZH4 202 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 MCTS1Q9ULC4 181 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 IQCMA0A1B0GVH7 501 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ELOA3DA6NLF2 546 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ANKRD28O15084 1053 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 SERPINA1P01009 418 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 CCNOP22674 350 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 EDNRAP25101 427 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 PTGDSP41222 190 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 VAMP2P63027 116 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 PEA15Q15121 130 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 RGNQ15493 299 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ELOA3BQ3SY89 546 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 AKR1C8PQ5T2L2 129 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 VTCN1Q7Z7D3 282 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 ELOA3Q8NG57 546 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 RXFP4Q8TDU9 374 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 C11orf54Q9H0W9 315 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 CLDN14O95500 239 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 CYC1P08574 325 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 SPARCP09486 303 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 NID1P14543 1247 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 FUT1P19526 365 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 DSCR4P56555 118 aaPredicted RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 PIN1Q13526 163 aaPredicted RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 GPR50Q13585 617 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 PDE7AQ13946 482 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 REP15Q6BDI9 236 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 BLOC1S3Q6QNY0 202 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF813Q6ZN06 617 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 FRRS1Q6ZNA5 592 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 PGAP1Q75T13 922 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 CAMKMTQ7Z624 323 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 SIAH3Q8IW03 269 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 C9orf62Q8N4C0 152 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF441Q8N8Z8 693 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 DNAAF1Q8NEP3 725 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 C1GALT1C1Q96EU7 318 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 RNF170Q96K19 258 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 RBM24Q9BX46 236 aaKnown RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 RNF32Q9H0A6 362 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 PRPF19Q9UMS4 504 aaKnown RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A087WV62 115 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 ALDOBP05062 364 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 ARSJQ5FYB0 599 aaPredicted RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM201Q5SNT2 666 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM99Q8N816 258 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 MAPK1IP1LQ8NDC0 245 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 CNIH3Q8TBE1 160 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 RNASE8Q8TDE3 154 aaKnown RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF300Q96RE9 604 aaPredicted RBP7□□□□□ -1.29
LIMCH1-219ENST00000514096 DOK1Q99704 481 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 ARL6Q9H0F7 186 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 NUDT15Q9NV35 164 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 FBN2P35556 2912 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 FXYD6-FXYD2A0A087WZ82 144 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 hCG_1809904A0A1W2PP81 198 aa7□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A1W2PPE2 198 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms