RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 DCHS2Q6V1P9 2916 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 TMEM269A0A1B0GVZ9 245 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 LOC110117498-PIK3R3F6TDL0 507 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 TACSTD2P09758 323 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 OR4A8P0C604 315 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 CCDC159P0C7I6 412 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 APOBEC3AP31941 199 aaPredicted RBP12.88□□□□□ -0.35
NUP54-213ENST00000513352 GLRXP35754 106 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 ETV1P50549 477 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 SELENOVP59797 346 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 SNAI3Q3KNW1 292 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 ZNF718Q3SXZ3 478 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 ZNF544Q6NX49 715 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 COMMD2Q86X83 199 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 TMEM171Q8WVE6 324 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 COG8Q96MW5 612 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 SYT3Q9BQG1 590 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 OR2J1Q9GZK6 312 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 CCDC90BQ9GZT6 254 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 OR10A2Q9H208 303 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 POFUT1Q9H488 388 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 ZNF442Q9H7R0 627 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 ACOXLQ9NUZ1 547 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 UBAP1Q9NZ09 502 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 DUSP13Q9UII6 198 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 HRNRQ86YZ3 2850 aaPredicted RBP12.88□□□□□ -0.35
NUP54-213ENST00000513352 DSCAMO60469 2012 aa12.88□□□□□ -0.35
NUP54-213ENST00000513352 A0A1W2PPW3 197 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 J3QW42 95 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 MYL12BO14950 172 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 SULT1C4O75897 302 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 ATE1O95260 518 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 SERPINF1P36955 418 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 PSMB10P40306 273 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 KLF3P57682 345 aaPredicted RBP12.87□□□□□ -0.35
NUP54-213ENST00000513352 OR12D2P58182 307 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 KRTAP10-9P60411 292 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 MVKQ03426 396 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 MFGE8Q08431 387 aaPredicted RBP12.87□□□□□ -0.35
NUP54-213ENST00000513352 ADIPOQQ15848 244 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 TIGD6Q17RP2 521 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 CDONQ4KMG0 1287 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 BCL2L15Q5TBC7 163 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 LIPNQ5VXI9 398 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 TMPRSS11AQ6ZMR5 421 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 MRPL21Q7Z2W9 205 aaKnown RBP12.87□□□□□ -0.35
NUP54-213ENST00000513352 C1orf174Q8IYL3 243 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 MUC15Q8N387 334 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 KLHL36Q8N4N3 616 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 ZNF611Q8N823 705 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 OR2AE1Q8NHA4 323 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 SYNPRQ8TBG9 265 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 SGCDQ92629 289 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 NRGNQ92686 78 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 PLK3Q9H4B4 646 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 PLEKHF2Q9H8W4 249 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 ERVK-18Q9QC07 812 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 R4GMQ9 66 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 CENPEQ02224 2701 aa12.87□□□□□ -0.35
NUP54-213ENST00000513352 RAI1Q7Z5J4 1906 aaPredicted RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 C5orf63A6NC05 138 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 RGS10O43665 173 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 TIMM8AO60220 97 aaPredicted RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 ICMTO60725 284 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 CDK1P06493 297 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 ADRA2AP08913 450 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 LIMS3P0CW19 117 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 LIMS4P0CW20 117 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 CRHBPP24387 322 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 TTKP33981 857 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 MPV17P39210 176 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 PRSS12P56730 875 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 HLXQ14774 488 aaPredicted RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 MSMPQ1L6U9 139 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 ALKBH6Q3KRA9 238 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 GLYATL3Q5SZD4 288 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 ZNF684Q5T5D7 378 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 OR2G6Q5TZ20 316 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 AGAP6Q5VW22 663 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 C20orf204Q6ZNR8 217 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 COLCA1Q6ZS62 124 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 KCTD20Q7Z5Y7 419 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 LRP11Q86VZ4 500 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 OR8B12Q8NGG6 310 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 KLF14Q8TD94 323 aaPredicted RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 MRPL24Q96A35 216 aaKnown RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 CMBLQ96DG6 245 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 MARS2Q96GW9 593 aaKnown RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 CCL19Q99731 98 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 JAM3Q9BX67 310 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 MRPL37Q9BZE1 423 aaKnown RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 PBOV1Q9GZY1 135 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 ISG20L2Q9H9L3 353 aaKnown RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 DYNLRB1Q9NP97 96 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 FKBP14Q9NWM8 211 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 PAK1IP1Q9NWT1 392 aaPredicted RBP12.86□□□□□ -0.35
NUP54-213ENST00000513352 FAM206AQ9NX38 181 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 CLEC2DQ9UHP7 191 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 LAMP3Q9UQV4 416 aa12.86□□□□□ -0.35
NUP54-213ENST00000513352 CAB39Q9Y376 341 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms