RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 GOLGA4Q13439 2230 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 AGFG1P52594 562 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 B2MP61769 119 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 PDXPQ96GD0 296 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 DOK1Q99704 481 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 AAMDCQ9H7C9 122 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 SLAMF8Q9P0V8 285 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 LSM2Q9Y333 95 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ZC3H13Q5T200 1668 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 PXDNQ92626 1479 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 SH2D1BO14796 132 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF253O75346 499 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 GNG4P50150 75 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 RPS23P62266 143 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 HOXC5Q00444 222 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF789Q5FWF6 425 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 FOXB2Q5VYV0 432 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 FAHD1Q6P587 224 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 GPR32P1Q8NGA4 272 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 NXPE3Q969Y0 559 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 MARVELD3Q96A59 401 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 MEGF10Q96KG7 1140 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 GPX7Q96SL4 187 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 NUDT16L1Q9BRJ7 211 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 LRFN3Q9BTN0 628 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 PARD6GQ9BYG4 376 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 RNF39Q9H2S5 420 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ACER3Q9NUN7 267 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ADGRB1O14514 1584 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 IGLON5A6NGN9 336 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 TIMM8AO60220 97 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 CST5P28325 142 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF252P-AS1Q0IIN9 211 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 TAZQ16635 292 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 KHDC3LQ587J8 217 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 Q6ZSR9 355 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 CARFQ8N187 725 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 CPEB3Q8NE35 698 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 C19orf43Q9BQ61 176 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 ADAT1Q9BUB4 502 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 PRDM7Q9NQW5 492 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 LEUTXA8MZ59 168 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 MASP2O00187 686 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 CORTO00230 105 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 SLC17A2O00624 439 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 INHBBP09529 407 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 OR5AC1P0C628 307 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 SCGB1A1P11684 91 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 H1FNTQ75WM6 255 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 RABEPKQ7Z6M1 372 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 BOD1Q96IK1 185 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 EPHX3Q9H6B9 360 aa10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 UBE2ZQ9H832 354 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-217ENST00000512946 SIAH2O43255 324 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 HAND1O96004 215 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 SLC35E2P0CK97 266 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PGA4P0DJD7 388 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PGA5P0DJD9 388 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 NID1P14543 1247 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 LGALS4P56470 323 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PIGPP57054 158 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 MYPOPQ86VE0 399 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 MARCH1Q8TCQ1 289 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PTP4A1Q93096 173 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 TMEM167BQ9NRX6 74 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 FAM206AQ9NX38 181 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF835Q9Y2P0 537 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 RCL1Q9Y2P8 373 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 A0A1W2PP55 124 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 KCNAB3O43448 404 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 XRCC2O43543 280 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 CLDN17P56750 224 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 IL24Q13007 206 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 SHHQ15465 462 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 DEFB118Q96PH6 123 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 SLIRPQ9GZT3 109 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 LINC00597Q9H2U6 94 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF355PQ9NSJ1 428 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 RBFOX3A6NFN3 312 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 WNT11O96014 354 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 MT-ND6P03923 174 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 RHOBP62745 196 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 FAM209BQ5JX69 171 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 Q7L0L9 218 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 DCXRQ7Z4W1 244 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 DTD1Q8TEA8 209 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 DNAJA3Q96EY1 480 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 CSF3RQ99062 836 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 OR2J1Q9GZK6 312 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF107Q9UII5 783 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 CHST2Q9Y4C5 530 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 A0A0G2JLL6 359 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 CNIH1O95406 144 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 HPP00738 406 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 TGFBR1P36897 503 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PTGFRP43088 359 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 FAM3BP58499 235 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 LINC00303Q3SY05 128 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 XKR7Q5GH72 579 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 SCGB1D4Q6XE38 83 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms