RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NKAIN4Q8IVV8 208 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 WDFY1Q8IWB7 410 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 LGI3Q8N145 548 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 GLYATL2Q8WU03 294 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 PEX13Q92968 403 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 BTN2A3PQ96KV6 586 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 C9orf72Q96LT7 481 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR52D1Q9H346 318 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 TMEM27Q9HBJ8 222 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 DDX18Q9NVP1 670 aaKnown RBP2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 AHSPQ9NZD4 102 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 PSME2Q9UL46 239 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 TSSC4Q9Y5U2 329 aaPredicted RBP2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 PTPRTO14522 1441 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 OBSCNQ5VST9 7968 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 IGKV1-8A0A0C4DH67 115 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 TMEM120BA0PK00 339 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 PDZK1P1A8MUH7 402 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 PLPP1O14494 284 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 KRT16P08779 473 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR8U9P0C7N5 309 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNF688P0C7X2 276 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 C1GALT1C1LP0DN25 315 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 RALBP11234 206 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 OPRK1P41145 380 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLC11A1P49279 550 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 CLDN18P56856 261 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 MPV17L2Q567V2 206 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 GCSAMLQ5JQS6 135 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 PLCXD3Q63HM9 321 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLC16A13Q7RTY0 426 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 VKORC1L1Q8N0U8 176 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 CSGALNACT2Q8N6G5 542 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR6N1Q8NGY5 312 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR10G6Q8NH81 332 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNF461Q8TAF7 563 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 GPX8Q8TED1 209 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 RAB1CQ92928 201 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 RPEQ96AT9 228 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNF488Q96MN9 340 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 RNF157Q96PX1 679 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLIRPQ9GZT3 109 aaKnown RBP2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZC4H2Q9NQZ6 224 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 SIRT7Q9NRC8 400 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLC17A7Q9P2U7 560 aa2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 YARS2Q9Y2Z4 477 aaKnown RBP2.38□□□□□ -2.03
HMGB1P28-201ENST00000507778 PLEKHG2Q9H7P9 1386 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 NACAE9PAV3 2078 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 TNS2Q63HR2 1409 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 SMIM26A0A096LP01 95 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 IGHV3OR16-9A0A0B4J2B5 98 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 IGHV1-69DA0A0B4J2H0 117 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 A0A1B0GTQ1 180 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 GABRPO00591 440 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 SOCS1O15524 211 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 AKR7A2O43488 359 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 XRCC2O43543 280 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 PGA5P0DJD9 388 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 CD37P11049 281 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 TALDO1P37837 337 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 CCT6AP40227 531 aaKnown RBP2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 PMELP40967 661 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 CXCL12P48061 93 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 SERPINB8P50452 374 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 RPL23P62829 140 aaKnown RBP2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 CRADDP78560 199 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 CDK5Q00535 292 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 DNAJC3Q13217 504 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 PIP5KL1Q5T9C9 394 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 AP1ARQ63HQ0 302 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNF547Q8IVP9 402 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 INO80EQ8NBZ0 244 aaPredicted RBP2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR51F2Q8NH61 342 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 LILRB4Q8NHJ6 448 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 CA5BP1Q8WTZ4 195 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 HAUS1Q96CS2 278 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 NEURL3Q96EH8 262 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 L3HYPDHQ96EM0 354 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 DYNLL2Q96FJ2 89 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 GPR21Q99679 349 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 FGF23Q9GZV9 251 aaPredicted RBP2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLC38A10Q9HBR0 1119 aa2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNF282Q9UDV7 671 aaPredicted RBP2.37□□□□□ -2.03
HMGB1P28-201ENST00000507778 C7orf66A4D0T2 115 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 GABRR3A8MPY1 467 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 KRBOX1C9JBD0 128 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 ERI3O43414 337 aaKnown RBP2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 CHST10O43529 356 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 NMT2O60551 498 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 PGA4P0DJD7 388 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 PGA3P0DJD8 388 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 TCP1P17987 556 aaKnown RBP2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 RAB5AP20339 215 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 MYL9P24844 172 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 HTR1DP28221 377 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 PFN2P35080 140 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 KIR3DL2P43630 455 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 GPR1P46091 355 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 FABP6P51161 128 aa2.36□□□□□ -2.03
HMGB1P28-201ENST00000507778 GFERP55789 205 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms