RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HDDC2Q7Z4H3 204 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 VTCN1Q7Z7D3 282 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 CLDN22Q8N7P3 220 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 C11orf44Q8N8P7 122 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 SCCPDHQ8NBX0 429 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 ADAMTS16Q8TE57 1224 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 PTP4A1Q93096 173 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 CCDC124Q96CT7 223 aaKnown RBP13.59□□□□□ -0.23
VIM-208ENST00000497849 EVA1AQ9H8M9 152 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 INIPQ9NRY2 104 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 FBLN5Q9UBX5 448 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 VPREB3Q9UKI3 123 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 SLC7A7Q9UM01 511 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 V9GYQ6 96 aa13.59□□□□□ -0.23
VIM-208ENST00000497849 BIRC6Q9NR09 4857 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 LRRC30A6NM36 301 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 SCG5P05408 212 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 COX5BP10606 129 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 ATP6V1B2P21281 511 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 TGFBR2P37173 567 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 OR1E2P47887 323 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 SRP9P49458 86 aaKnown RBP13.58□□□□□ -0.24
VIM-208ENST00000497849 PCBD1P61457 104 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 HOXA4Q00056 320 aaPredicted RBP13.58□□□□□ -0.24
VIM-208ENST00000497849 METTL11BQ5VVY1 283 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 VASH1Q7L8A9 365 aaPredicted RBP13.58□□□□□ -0.24
VIM-208ENST00000497849 PDZD9Q8IXQ8 264 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 FAM86B1Q8N7N1 296 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 MOSPD2Q8NHP6 518 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 CFHR4Q92496 578 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 ITPKCQ96DU7 683 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 TECTBQ96PL2 329 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 PRSS27Q9BQR3 290 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 TOR3AQ9H497 397 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 SH3GLB1Q9Y371 365 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 SNX13Q9Y5W8 968 aa13.58□□□□□ -0.24
VIM-208ENST00000497849 F5H5P2 479 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 GMNNO75496 209 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 TSPAN19P0C672 248 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 RAC2P15153 192 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 FUT1P19526 365 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 NPY4RP50391 375 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 SELENOWP63302 87 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 TRIM25Q14258 630 aaKnown RBP13.57□□□□□ -0.24
VIM-208ENST00000497849 CD276Q5ZPR3 534 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 OR2T2Q6IF00 324 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 CBLL1Q75N03 491 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 SYT9Q86SS6 491 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 C1orf87Q8N0U7 546 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 GALNT4Q8N4A0 578 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 OR8G5Q8NG78 346 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 OR13G1Q8NGZ3 307 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 PHF21AQ96BD5 680 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 MPP4Q96JB8 637 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 NSMCE2Q96MF7 247 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 SEMA6AQ9H2E6 1030 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 ZNRD1Q9P1U0 126 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 STX18Q9P2W9 335 aaKnown RBP13.57□□□□□ -0.24
VIM-208ENST00000497849 TMCC3Q9ULS5 477 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 FOXJ3Q9UPW0 622 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 SIGLEC9Q9Y336 463 aa13.57□□□□□ -0.24
VIM-208ENST00000497849 TRAPPC13A5PLN9 417 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 IFNA14P01570 189 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 ARF6P62330 175 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 ELF3P78545 371 aaPredicted RBP13.56□□□□□ -0.24
VIM-208ENST00000497849 C1orf146Q5VVC0 180 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 CCBE1Q6UXH8 406 aaPredicted RBP13.56□□□□□ -0.24
VIM-208ENST00000497849 SLC7A6Q92536 515 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 HSH2DQ96JZ2 352 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 GORASP2Q9H8Y8 452 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 SMURF1Q9HCE7 757 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 DCAF13Q9NV06 445 aaKnown RBP13.56□□□□□ -0.24
VIM-208ENST00000497849 MAGEL2Q9UJ55 1249 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 POMPQ9Y244 141 aa13.56□□□□□ -0.24
VIM-208ENST00000497849 RYR2Q92736 4967 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 A0A1W2PPL8 197 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 NPIPB13A6NJU9 1138 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 NPIPB4C9JG80 1138 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 ACOT8O14734 319 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 XPNPEP2O43895 674 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 DOK2O60496 412 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 FCN3O75636 299 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 NR2C1P13056 603 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 MSR1P21757 451 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 GABRA5P31644 462 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 GATA4P43694 442 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 YAP1P46937 504 aaKnown RBP13.55□□□□□ -0.24
VIM-208ENST00000497849 HTR5AP47898 357 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 EFNB2P52799 333 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 LAPTM4AQ15012 233 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 C1orf94Q6P1W5 598 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 FKBP9P1Q75LS8 142 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 DHFR2Q86XF0 187 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 PNLDC1Q8NA58 520 aaKnown RBP13.55□□□□□ -0.24
VIM-208ENST00000497849 PFN4Q8NHR9 129 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 COG8Q96MW5 612 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 ALG12Q9BV10 488 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 TXNIPQ9H3M7 391 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 EMC7Q9NPA0 242 aa13.55□□□□□ -0.24
VIM-208ENST00000497849 C20orf141Q9NUB4 165 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms