RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 EIF1P41567 113 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 TMED10P49755 219 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 SULT1E1P49888 294 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 GZMMP51124 257 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 CDH6P55285 790 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 CMC4P56277 68 aaPredicted RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 RPL23P62829 140 aaKnown RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 DMC1Q14565 340 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 ALKBH6Q3KRA9 238 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 YIF1BQ5BJH7 314 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 TBPL2Q6SJ96 375 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 Q6ZS52 159 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 CBLN2Q8IUK8 224 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NKAIN4Q8IVV8 208 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 IQCKQ8N0W5 287 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 C11orf72Q8NBR9 251 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 ZNF502Q8TBZ5 544 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 SLC7A13Q8TCU3 470 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 ACMSDQ8TDX5 336 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 PALLDQ8WX93 1383 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NRGNQ92686 78 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 CPNE4Q96A23 557 aaPredicted RBP1.02□□□□□ -2.25
VPS50-216ENST00000484954 TMEM159Q96B96 161 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 RASD2Q96D21 266 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 SEC22CQ9BRL7 303 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 C1orf50Q9BV19 199 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NUP58Q9BVL2 599 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 SLC2A8Q9NY64 477 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 NUP50Q9UKX7 468 aa1.02□□□□□ -2.25
VPS50-216ENST00000484954 BAHCC1Q9P281 2608 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 HEATR9A2RTY3 570 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 C4orf51C9J302 202 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 H7C417 338 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 AP3B1O00203 1094 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 MPHOSPH10O00566 681 aaKnown RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 MFNGO00587 321 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 OR2J3O76001 311 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 AQP8O94778 261 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 PAHP00439 452 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 SERPINA5P05154 406 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 PFN1P07737 140 aaKnown RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 ACSM4P0C7M7 580 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 INAFM2P0DMQ5 153 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 NAA10P41227 235 aaPredicted RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 IDH2P48735 452 aaKnown RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 SYNJ2BPP57105 145 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 ADARB1P78563 741 aaKnown RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 BEX3Q00994 111 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 TGM3Q08188 693 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 SELENBP1Q13228 472 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 IDI1Q13907 227 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 MAD2L1BPQ15013 274 aaPredicted RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 QPRTQ15274 297 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 SSX2Q16385 188 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 MRPL23Q16540 153 aaKnown RBP1.01□□□□□ -2.25
VPS50-216ENST00000484954 VPS26BQ4G0F5 336 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 SOHLH1Q5JUK2 328 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 LRRC66Q68CR7 880 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 SLC8B1Q6J4K2 584 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 CERS6Q6ZMG9 384 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 STK40Q8N2I9 435 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 NPWQ8N729 165 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 PRELID2Q8N945 189 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 OR7G2Q8NG99 324 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 OR2A1Q8NGT9 310 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 NUBPLQ8TB37 319 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 CCDC126Q96EE4 140 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 TPD52L3Q96J77 140 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 OR5B12Q96R08 314 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 PKMYT1Q99640 499 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 CCDC77Q9BR77 488 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 ANKRD60Q9BZ19 345 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 TMEM165Q9HC07 324 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 TMEM9BQ9NQ34 198 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 PARP11Q9NR21 331 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 NMRK1Q9NWW6 199 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 MTCH1Q9NZJ7 389 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 MTFP1Q9UDX5 166 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 R4GN34 69 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 CACNA1GO43497 2377 aa1.01□□□□□ -2.25
VPS50-216ENST00000484954 DNALI1O14645 258 aaPredicted RBP1□□□□□ -2.25
VPS50-216ENST00000484954 CLOCKO15516 846 aa1□□□□□ -2.25
VPS50-216ENST00000484954 RNF13O43567 381 aa1□□□□□ -2.25
VPS50-216ENST00000484954 CDC40O60508 579 aaKnown RBP eCLIP1□□□□□ -2.25
VPS50-216ENST00000484954 SEMA3DO95025 777 aa1□□□□□ -2.25
VPS50-216ENST00000484954 OXTP01178 125 aa1□□□□□ -2.25
VPS50-216ENST00000484954 SERPINE2P07093 398 aa1□□□□□ -2.25
VPS50-216ENST00000484954 ASGR1P07306 291 aa1□□□□□ -2.25
VPS50-216ENST00000484954 CT45A6P0DMU7 189 aa1□□□□□ -2.25
VPS50-216ENST00000484954 CT45A5P0DMU8 189 aa1□□□□□ -2.25
VPS50-216ENST00000484954 CT45A7P0DMV0 189 aa1□□□□□ -2.25
VPS50-216ENST00000484954 ERGP11308 486 aa1□□□□□ -2.25
VPS50-216ENST00000484954 TCP1P17987 556 aaKnown RBP1□□□□□ -2.25
VPS50-216ENST00000484954 TNNI1P19237 187 aa1□□□□□ -2.25
VPS50-216ENST00000484954 GGT1P19440 569 aa1□□□□□ -2.25
VPS50-216ENST00000484954 TNNT2P45379 298 aaPredicted RBP1□□□□□ -2.25
VPS50-216ENST00000484954 CSNK1EP49674 416 aaKnown RBP1□□□□□ -2.25
VPS50-216ENST00000484954 RAB10P61026 200 aa1□□□□□ -2.25
VPS50-216ENST00000484954 SP4Q02446 784 aa1□□□□□ -2.25
VPS50-216ENST00000484954 LRRC74AQ0VAA2 488 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms