RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CMBLQ96DG6 245 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 IL4I1Q96RQ9 567 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 CNN2Q99439 309 aaKnown RBP13.54□□□□□ -0.24
UPF3A-208ENST00000484246 SLC29A1Q99808 456 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 REG4Q9BYZ8 158 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 NIPAL2Q9H841 368 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 CENPMQ9NSP4 180 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 WARS2Q9UGM6 360 aaKnown RBP13.54□□□□□ -0.24
UPF3A-208ENST00000484246 ZDHHC8Q9ULC8 765 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 KLHDC2Q9Y2U9 406 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 TMEM14AQ9Y6G1 99 aa13.54□□□□□ -0.24
UPF3A-208ENST00000484246 IQCF6A8MYZ5 107 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 GPR37O15354 613 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 TIMM8AO60220 97 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-208ENST00000484246 RP2O75695 350 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 BAG2O95816 211 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 IGHV1-46P01743 117 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 HPXP02790 462 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 LCATP04180 440 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 ANPEPP15144 967 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 SELEP16581 610 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 HTR1FP30939 366 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 SNRPGP62308 76 aaKnown RBP13.53□□□□□ -0.24
UPF3A-208ENST00000484246 ROM1Q03395 351 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 LOXL1Q08397 574 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-208ENST00000484246 MALLQ13021 153 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 CDK5R2Q13319 367 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 RCN1Q15293 331 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 TAF13Q15543 124 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 SNAI3Q3KNW1 292 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 ZNF540Q8NDQ6 660 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 GTF3AQ92664 365 aaKnown RBP13.53□□□□□ -0.24
UPF3A-208ENST00000484246 RDH5Q92781 318 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 SPSB4Q96A44 273 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 PIMREGQ9BSJ6 248 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 SP140LQ9H930 580 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 ADGRL4Q9HBW9 690 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 IMPAD1Q9NX62 359 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 PTTG3PQ9NZH4 202 aa13.53□□□□□ -0.24
UPF3A-208ENST00000484246 ZNF469Q96JG9 3925 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-208ENST00000484246 RNF223E7ERA6 249 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 ACHEP22303 614 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 DCTDP32321 178 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 NR4A2P43354 598 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 MAGEB1P43366 347 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 PSMA6P60900 246 aaKnown RBP13.52□□□□□ -0.25
UPF3A-208ENST00000484246 POU4F2Q12837 409 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 RIN1Q13671 783 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 GK2Q14410 553 aaPredicted RBP13.52□□□□□ -0.25
UPF3A-208ENST00000484246 ALKBH6Q3KRA9 238 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 BCDIN3DQ7Z5W3 292 aaKnown RBP13.52□□□□□ -0.25
UPF3A-208ENST00000484246 NAA40Q86UY6 237 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 PACRGLQ8N7B6 248 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 OR52H1Q8NGJ2 320 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 FAM81AQ8TBF8 368 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 ASB17Q8WXJ9 295 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 RFKQ969G6 155 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 CHODLQ9H9P2 273 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 H2AFY2Q9P0M6 372 aaPredicted RBP13.52□□□□□ -0.25
UPF3A-208ENST00000484246 LAMP5Q9UJQ1 280 aa13.52□□□□□ -0.25
UPF3A-208ENST00000484246 FLNAP21333 2647 aaKnown RBP13.52□□□□□ -0.25
UPF3A-208ENST00000484246 DLGAP1O14490 977 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 PHYHO14832 338 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 CASQ2O14958 399 aaPredicted RBP13.51□□□□□ -0.25
UPF3A-208ENST00000484246 SLC16A6O15403 523 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 XRCC2O43543 280 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 H2BFMP0C1H6 154 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 SBK2P0C263 348 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 HSD11B1P28845 292 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 SLC6A9P48067 706 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 CX3CR1P49238 355 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 PRKXP51817 358 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 HLXQ14774 488 aaPredicted RBP13.51□□□□□ -0.25
UPF3A-208ENST00000484246 MEDAGQ5VYS4 303 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 KCTD18Q6PI47 426 aaPredicted RBP13.51□□□□□ -0.25
UPF3A-208ENST00000484246 Q6ZR03 302 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF283Q8N7M2 679 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 OR8G5Q8NG78 346 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF582Q96NG8 517 aaPredicted RBP13.51□□□□□ -0.25
UPF3A-208ENST00000484246 OR8B4Q96RC9 309 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 SLC30A2Q9BRI3 323 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 REPIN1Q9BWE0 567 aaKnown RBP13.51□□□□□ -0.25
UPF3A-208ENST00000484246 SAP30LQ9HAJ7 183 aa13.51□□□□□ -0.25
UPF3A-208ENST00000484246 RTTNQ86VV8 2226 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ANKRD65E5RJM6 399 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 SPRY3O43610 288 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF254O75437 659 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 GABRB1P18505 474 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ANOS1P23352 680 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 CFL1P23528 166 aaKnown RBP13.5□□□□□ -0.25
UPF3A-208ENST00000484246 CRYBB2P43320 205 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF121P58317 390 aaPredicted RBP13.5□□□□□ -0.25
UPF3A-208ENST00000484246 CCL8P80075 99 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 OCLNQ16625 522 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ZIK1Q3SY52 487 aaPredicted RBP13.5□□□□□ -0.25
UPF3A-208ENST00000484246 GLYATL3Q5SZD4 288 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 OR2T2Q6IF00 324 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 PGAP1Q75T13 922 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 SPATC1Q76KD6 591 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 MRPL21Q7Z2W9 205 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms