RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SCRN3Q0VDG4 424 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 PMPCAQ10713 525 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 TPBGQ13641 420 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 CDK5R1Q15078 307 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 RAB35Q15286 201 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 CCDC92Q53HC0 331 aaPredicted RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 ARMCX4Q5H9R4 360 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 PRR31Q5SQ13 230 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 OR7E24Q6IFN5 339 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 KCTD18Q6PI47 426 aaPredicted RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 DEGS2Q6QHC5 323 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 FAM220AQ7Z4H9 259 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 KCTD20Q7Z5Y7 419 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 KLBQ86Z14 1044 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 ZNF679Q8IYX0 411 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 GABRG1Q8N1C3 465 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 LRRC18Q8N456 261 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 ZNF433Q8N7K0 673 aaPredicted RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 YIPF7Q8N8F6 280 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 ZFP41Q8N8Y5 198 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 OR2AJ1Q8NGZ0 328 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 RPS4Y2Q8TD47 263 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 HAVCR2Q8TDQ0 301 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 BCL2L2Q92843 193 aaPredicted RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 UFD1Q92890 307 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 SLAMF6Q96DU3 332 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 FBXO17Q96EF6 278 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 SH3GL3Q99963 347 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 VKORC1Q9BQB6 163 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 OPN3Q9H1Y3 402 aaPredicted RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 C1orf198Q9H425 327 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 ELOVL3Q9HB03 270 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 SMURF1Q9HCE7 757 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 PLSCR4Q9NRQ2 329 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 DDX28Q9NUL7 540 aaKnown RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 NDUFB11Q9NX14 153 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 BABAM2Q9NXR7 383 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 Q9UFV3 132 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 ST6GALNAC2Q9UJ37 374 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 MEMO1Q9Y316 297 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 GRIP1Q9Y3R0 1128 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 LRP12Q9Y561 859 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 SIRT4Q9Y6E7 314 aaPredicted RBP5.8□□□□□ -1.48
USP48-208ENST00000479177 CEPT1Q9Y6K0 416 aa5.8□□□□□ -1.48
USP48-208ENST00000479177 CADP27708 2225 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 TRGV8A0A0C4DH27 118 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 OR6C6A6NF89 314 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ZNF561-AS1K7EIQ3 104 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 CCRL2O00421 344 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 OGG1O15527 345 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ZNF254O75437 659 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 SRSF10O75494 262 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 RPP14O95059 124 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 GABARAPO95166 117 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 TACSTD2P09758 323 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 H2BFMP0C1H6 154 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 CD36P16671 472 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 FAHP16930 419 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ZNF32P17041 273 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 CRYGSP22914 178 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 OPRM1P35372 400 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 PSMB10P40306 273 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 KIR3DL2P43630 455 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 TGM4P49221 684 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 RGS6P49758 472 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 GTF2A1P52655 376 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 RIDAP52758 137 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 GBX2P52951 348 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 NANOS3P60323 173 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 PCBD1P61457 104 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 RPS25P62851 125 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 MFGE8Q08431 387 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 MRPL28Q13084 256 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 MRPL49Q13405 166 aaKnown RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 TBRG1Q3YBR2 411 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 CCDC58Q4VC31 144 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 HIKESHIQ53FT3 197 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 TM4SF20Q53R12 229 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ELFN2Q5R3F8 820 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 GPR107Q5VW38 600 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 LIPNQ5VXI9 398 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 LIPKQ5VXJ0 399 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 DMKNQ6E0U4 476 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 TMEM211Q6ICI0 200 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ANKRD16Q6P6B7 361 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ZNF474Q6S9Z5 364 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 ARL9Q6T311 187 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 SLC16A12Q6ZSM3 486 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 RHOUQ7L0Q8 258 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 SLC16A14Q7RTX9 510 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 KRT77Q7Z794 578 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 DPPA2Q7Z7J5 298 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 P2RY8Q86VZ1 359 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 CLVS1Q8IUQ0 354 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 SKA3Q8IX90 412 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 PHC2Q8IXK0 858 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 ZNF610Q8N9Z0 462 aa5.79□□□□□ -1.48
USP48-208ENST00000479177 RELL2Q8NC24 303 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 C1orf162Q8NEQ5 155 aaPredicted RBP5.79□□□□□ -1.48
USP48-208ENST00000479177 GJC3Q8NFK1 279 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms