RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 WNT2P09544 360 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 T-ENOLP0DO92 83 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 IFNGR2P38484 337 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 ZNF154Q13106 437 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 PRAMEF6Q5VXH4 476 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 SPICQ8N5J4 248 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 ZNF511Q8NB15 262 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 OR2AJ1Q8NGZ0 328 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 OR2AE1Q8NHA4 323 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 CLPTM1LQ96KA5 538 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 CCT8L2Q96SF2 557 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 ARMC1Q9NVT9 282 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 INSIG2Q9Y5U4 225 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 WNK2Q9Y3S1 2297 aa13.97□□□□□ -0.17
USP40-212ENST00000473191 IGHV3OR16-10A0A075B7F0 116 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 A0A1B0GWJ7 208 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 A8MXK9 166 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 SURF4O15260 269 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 IDH3BO43837 385 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 KRT36O76013 467 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 CCNB2O95067 398 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 ZNF12P17014 697 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 CFPP27918 469 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 MDH2P40926 338 aaKnown RBP13.96□□□□□ -0.17
USP40-212ENST00000473191 PAX2Q02962 417 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 ZNF92Q03936 586 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 CRMP1Q14194 572 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 MPPED2Q15777 294 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 LYPD2Q6UXB3 125 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 USP43Q70EL4 1123 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 PROKR2Q8NFJ6 384 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 ZNF48Q96MX3 618 aaPredicted RBP13.96□□□□□ -0.17
USP40-212ENST00000473191 DUX5Q96PT3 197 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 NIPSNAP1Q9BPW8 284 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 TMEM246Q9BRR3 403 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 RBM4Q9BWF3 364 aaKnown RBP13.96□□□□□ -0.17
USP40-212ENST00000473191 TSSK6Q9BXA6 273 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 TRIM15Q9C019 465 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 TMEM100Q9NV29 134 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 ZNF69Q9UC07 566 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 POLR3KQ9Y2Y1 108 aaPredicted RBP13.96□□□□□ -0.17
USP40-212ENST00000473191 PPIAL4AQ9Y536 164 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 COMMD3-BMI1R4GMX3 469 aa13.96□□□□□ -0.17
USP40-212ENST00000473191 PPIAL4EA0A075B759 164 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 PPIAL4CA0A0B4J2A2 164 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 PPIAL4DF5H284 164 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 M0R135 149 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 PPIAL4FP0DN26 164 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 SLC2A1P11166 492 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 ZNF823P16415 610 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 GATA3P23771 443 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 SLC36A3Q495N2 470 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 GLYATL3Q5SZD4 288 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 LCN8Q6JVE9 175 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 C12orf54Q6X4T0 127 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 RASSF6Q6ZTQ3 369 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 DCXRQ7Z4W1 244 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 SIGLECL1Q8N7X8 197 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 OR52L1Q8NGH7 329 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 TAF15Q92804 592 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP40-212ENST00000473191 ZNF799Q96GE5 643 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 NSL1Q96IY1 281 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 HCAR1Q9BXC0 346 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 MED20Q9H944 212 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 UFSP2Q9NUQ7 469 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 TBC1D23Q9NUY8 699 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 NDE1Q9NXR1 346 aa13.95□□□□□ -0.18
USP40-212ENST00000473191 SPARCP09486 303 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 CA6P23280 308 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 CD80P33681 288 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 SRP9P49458 86 aaKnown RBP13.94□□□□□ -0.18
USP40-212ENST00000473191 RAD23AP54725 363 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 ACTG1P63261 375 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 TUSC1Q2TAM9 212 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 SPATS1Q496A3 300 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 SLC27A4Q6P1M0 643 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 PGAP1Q75T13 922 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 SPATC1Q76KD6 591 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 DHFR2Q86XF0 187 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 KLBQ86Z14 1044 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 LNX2Q8N448 690 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 BPIFB2Q8N4F0 458 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 IQCF1Q8N6M8 205 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 FAM216AQ8WUB2 273 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 ZFAND2BQ8WV99 257 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 C1orf147Q96MC9 270 aaPredicted RBP13.94□□□□□ -0.18
USP40-212ENST00000473191 NMNAT2Q9BZQ4 307 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 DDX28Q9NUL7 540 aaKnown RBP13.94□□□□□ -0.18
USP40-212ENST00000473191 SAMHD1Q9Y3Z3 626 aaKnown RBP13.94□□□□□ -0.18
USP40-212ENST00000473191 N6AMT1Q9Y5N5 214 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 AUP1Q9Y679 476 aa13.94□□□□□ -0.18
USP40-212ENST00000473191 TMEM89A2RUT3 159 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 FAM20BO75063 409 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 IGHV4-38-2P0DP08 117 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 RPS2P15880 293 aaKnown RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 SPI1P17947 270 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 OTX1P32242 354 aaPredicted RBP13.93□□□□□ -0.18
USP40-212ENST00000473191 PRKXP51817 358 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 TPTEP56180 551 aa13.93□□□□□ -0.18
USP40-212ENST00000473191 PAX8Q06710 450 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms