RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR52E1Q8NGJ3 308 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 APOOQ9BUR5 198 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 GPR62Q9BZJ7 368 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 MTCH1Q9NZJ7 389 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 PRSS38A1L453 326 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 A6NIN4 97 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 PHOX2AO14813 284 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 FA2HQ7L5A8 372 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 HDAC8Q9BY41 377 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 NXF2Q9GZY0 626 aaKnown RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 TOX3O15405 576 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 XRCC2O43543 280 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 COL9A3Q14050 684 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 AMIGO3Q86WK7 504 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 GPR78Q96P69 363 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF768Q9H5H4 540 aaKnown RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 BCL2L10Q9HD36 194 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 A6NCN8 305 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 LRRC3CA6NJW4 275 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 FAM227AF5H4B4 570 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 RUNX3Q13761 415 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 PHLDA2Q53GA4 152 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 A0A087X0M5 115 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 A0A1B0GWA3 101 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 A0A1B0GX30 115 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 GALR2O43603 387 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 EPXP11678 715 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF343Q6P1L6 599 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 APCDD1Q8J025 514 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 PNPLA1Q8N8W4 532 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF275Q9NSD4 429 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 A0A1W2PPQ1 181 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 ALOX5APP20292 161 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 DSC1Q08554 894 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 TMEM88Q6PEY1 159 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 OR2A1Q8NGT9 310 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 OR10C1Q96KK4 312 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 UBE2ZQ9H832 354 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-209ENST00000472056 KIAA1456Q9P272 454 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 AREGP15514 252 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 KIR2DS2P43631 304 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 GALR1P47211 349 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 ARG2P78540 354 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 HSPB8Q9UJY1 196 aa12.16□□□□□ -0.46
COL6A3-209ENST00000472056 SPTAN1Q13813 2472 aaKnown RBP12.15□□□□□ -0.46
COL6A3-209ENST00000472056 DUXBA0A1W2PPF3 345 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 DBX1A6NMT0 343 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 DIO1P49895 249 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 ARFGAP1Q8N6T3 406 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 PLPP7Q8NBV4 271 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 TAAR9Q96RI9 348 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 AMBRA1Q9C0C7 1298 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF320A2RRD8 509 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 FRS3O43559 492 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 ARRB2P32121 409 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 IGFBP7Q16270 282 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 TRAT1Q6PIZ9 186 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 OR51F2Q8NH61 342 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 CD99L2Q8TCZ2 262 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF845Q96IR2 970 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-209ENST00000472056 NMNAT3Q96T66 252 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 EDEM2Q9BV94 578 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 UTS2O95399 124 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 KRTDAPP60985 99 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 BTG2P78543 158 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 CMBLQ96DG6 245 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 DSCR3O14972 297 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 ATP6V1FQ16864 119 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 B3GNT9Q6UX72 402 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 CLDND1Q9NY35 253 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 LDB3O75112 727 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 HRH1P35367 487 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 SQSTM1Q13501 440 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 GPRIN1Q7Z2K8 1008 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 OR2W3Q7Z3T1 314 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 OTX2P32243 289 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 CTF1Q16619 201 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 PDZD11Q5EBL8 140 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 MFSD12Q6NUT3 480 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF429Q86V71 674 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 SLC39A11Q8N1S5 342 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 NXPE3Q969Y0 559 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 GLIPR2Q9H4G4 154 aa12.15□□□□□ -0.46
COL6A3-209ENST00000472056 CASP8AP2Q9UKL3 1982 aa12.15□□□□□ -0.47
COL6A3-209ENST00000472056 PHF3Q92576 2039 aaKnown RBP12.15□□□□□ -0.47
COL6A3-209ENST00000472056 M0QYG6 137 aa12.15□□□□□ -0.47
COL6A3-209ENST00000472056 DUS4LO95620 317 aaKnown RBP12.15□□□□□ -0.47
COL6A3-209ENST00000472056 RPL11P62913 178 aaKnown RBP12.15□□□□□ -0.47
COL6A3-209ENST00000472056 KIAA1551Q9HCM1 1747 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TARM1B6A8C7 271 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 SOCS6O14544 535 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 F13BP05160 661 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF66Q6ZN08 573 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM204Q9BSN7 226 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 GABRQQ9UN88 632 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 R4GMQ9 66 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 GREB1Q4ZG55 1949 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 J3KTA2 159 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 PRICKLE3O43900 615 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 PIGPP57054 158 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms