RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 NEIL2Q969S2 332 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 TMEM106AQ96A25 262 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 SLAMF9Q96A28 289 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 OR4K3Q96R72 315 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 FEVQ99581 238 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 SEPHS2Q99611 448 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 KLHDC3Q9BQ90 382 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 AIF1LQ9BQI0 150 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 KRTAP2-2Q9BYT5 123 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 MFFQ9GZY8 342 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 WNT5BQ9H1J7 359 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 LCMT1Q9UIC8 334 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 PLLPQ9Y342 182 aa3.67□□□□□ -1.82
HMGB1-207ENST00000468384 PLSCR5A0PG75 271 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 MAGEA13PA6NCF6 341 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 MSGN1A6NI15 193 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 F8VZ95 297 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 PANO1I0J062 215 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 UBXN8O00124 270 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 KIF2AO00139 706 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 AP3B1O00203 1094 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 CCRL2O00421 344 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 PLPP1O14494 284 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 ANKRD28O15084 1053 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 OR10H3O60404 316 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 NME6O75414 186 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 KRT33AO76009 404 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 OXSR1O95747 527 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 IGHV3-13P01766 116 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 CT45A8P0DMV1 189 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 CT45A9P0DMV2 189 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 LBPP18428 481 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 ADRA1AP35348 466 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 OR3A4PP47883 348 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 SNU13P55769 128 aaKnown RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 KCNJ10P78508 379 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 CDR2Q01850 454 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 TGM3Q08188 693 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 DPYSL3Q14195 570 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 CT45A2Q5DJT8 189 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 MBOAT1Q6ZNC8 495 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 C6orf223Q8N319 242 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 GCSAMQ8N6F7 178 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 ZNF519Q8TB69 540 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 SLC5A11Q8WWX8 675 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 TNFRSF14Q92956 283 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 TUBGCP3Q96CW5 907 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 BSCL2Q96G97 398 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 AURKBQ96GD4 344 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 TSNARE1Q96NA8 513 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 F2RL3Q96RI0 385 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 PCDHB18PQ96TA0 734 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 FNDC11Q9BVV2 318 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 ROGDIQ9GZN7 287 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 RNF121Q9H920 327 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 SIX2Q9NPC8 291 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 RCC2Q9P258 522 aaKnown RBP3.66□□□□□ -1.82
HMGB1-207ENST00000468384 ONECUT1Q9UBC0 465 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 PPP1R3CQ9UQK1 317 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 SLC9A8Q9Y2E8 581 aa3.66□□□□□ -1.82
HMGB1-207ENST00000468384 IGHV4-4A0A075B6R2 117 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 FAM90A10PA6NDY2 464 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 GAGE12JA6NER3 117 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 VGLL3A8MV65 326 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 TAPBPO15533 448 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 IFNA10P01566 189 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 OR2T7P0C7T2 308 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 P0C879 139 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 CBLP22681 906 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 SOAT1P35610 550 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 FUSP35637 526 aaKnown RBP eCLIP3.65□□□□□ -1.83
HMGB1-207ENST00000468384 ACAA2P42765 397 aaKnown RBP3.65□□□□□ -1.83
HMGB1-207ENST00000468384 CD81P60033 236 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 TMED1Q13445 227 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 HSP90AA5PQ58FG0 334 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 PAPPA-AS1Q5QFB9 102 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 PVRIGQ6DKI7 326 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 PRR27Q6MZM9 219 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 APOOLQ6UXV4 268 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 ADCK1Q86TW2 530 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 ZC3HC1Q86WB0 502 aaKnown RBP3.65□□□□□ -1.83
HMGB1-207ENST00000468384 VRK2Q86Y07 508 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 TTLQ8NG68 377 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 OR52R1Q8NGF1 315 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 B4GALNT2Q8NHY0 566 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 VANGL1Q8TAA9 524 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-207ENST00000468384 PIGXQ8TBF5 258 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 SAMD8Q96LT4 415 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF75AQ96N20 296 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF582Q96NG8 517 aaPredicted RBP3.65□□□□□ -1.83
HMGB1-207ENST00000468384 OR5B2Q96R09 309 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 DPH5Q9H2P9 285 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 PELI2Q9HAT8 420 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 PLEKHA3Q9HB20 300 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 MS4A12Q9NXJ0 267 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 ERVK-18Q9QC07 812 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 EXTL2Q9UBQ6 330 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 HEY1Q9Y5J3 304 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 FLVCR1Q9Y5Y0 555 aa3.65□□□□□ -1.83
HMGB1-207ENST00000468384 A0A0B4J203 849 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms