RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SEH1LQ96EE3 360 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 SELENOIQ9C0D9 397 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 TMEM38AQ9H6F2 299 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 IFITM5A6NNB3 132 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 EFNA3P52797 238 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 MLF1P58340 268 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 GUCA2BQ16661 112 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 TIGITQ495A1 244 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 C1orf220Q5T0J3 134 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 FAM173AQ9BQD7 235 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 TMEM191AQ9H0A3 160 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 TIAM2Q8IVF5 1701 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 A0A1W2PPE2 198 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 FOXE1O00358 373 aaPredicted RBP12.12□□□□□ -0.47
USP40-208ENST00000450966 GEMIN2O14893 280 aaKnown RBP12.12□□□□□ -0.47
USP40-208ENST00000450966 CD3DP04234 171 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 CRYBB2P43320 205 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 XCR1P46094 333 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 SHC2P98077 582 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 COX19Q49B96 90 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 MBOAT2Q6ZWT7 520 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 ZNF573Q86YE8 665 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 TMEM151BQ8IW70 566 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 SLC22A24Q8N4F4 322 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 PNPLA1Q8N8W4 532 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 EMG1Q92979 244 aaKnown RBP12.12□□□□□ -0.47
USP40-208ENST00000450966 TMEM184BQ9Y519 407 aaPredicted RBP12.12□□□□□ -0.47
USP40-208ENST00000450966 OR1A2Q9Y585 309 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 TOGARAM1Q9Y4F4 1720 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 PRAMEF27A3QJZ7 478 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 C7orf66A4D0T2 115 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 FAM171A2A8MVW0 826 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 WNT1P04628 370 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 CXCL3P19876 107 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 CD68P34810 354 aaPredicted RBP12.12□□□□□ -0.47
USP40-208ENST00000450966 PRAMEF9Q5VWM5 478 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 RNLSQ5VYX0 342 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 PAQR6Q6TCH4 344 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 ALKAL1Q6UXT8 129 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 LDLRAD3Q86YD5 345 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 FER1L6-AS2Q96M78 137 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 SMDT1Q9H4I9 107 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 NTMQ9P121 344 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 PNMTP11086 282 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 CD27P26842 260 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 THBS4P35443 961 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 AMTP48728 403 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 ACER2Q5QJU3 275 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 OR2T10Q8NGZ9 312 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 ANAPC16Q96DE5 110 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 ELOVL3Q9HB03 270 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 RAB9BQ9NP90 201 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 OR6C3Q9NZP0 311 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 WASHC3Q9Y3C0 194 aa12.12□□□□□ -0.47
USP40-208ENST00000450966 DVL1O14640 695 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 GABRR1P24046 479 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 ZNF345Q14585 488 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 TFAP2EQ6VUC0 442 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 LRRC3BQ96PB8 259 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 FIZ1Q96SL8 496 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 NRIP2Q9BQI9 281 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 FGF2P09038 288 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 MYOGP15173 224 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 MEX3DQ86XN8 651 aaKnown RBP12.11□□□□□ -0.47
USP40-208ENST00000450966 C1QTNF3Q9BXJ4 246 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 LRIT1Q9P2V4 623 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 THAP10Q9P2Z0 257 aaPredicted RBP12.11□□□□□ -0.47
USP40-208ENST00000450966 CRHP06850 196 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 OR8G3PP0DMU2 310 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 CRISP2P16562 243 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 CHRNB4P30926 498 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 ZNF140P52738 457 aaPredicted RBP12.11□□□□□ -0.47
USP40-208ENST00000450966 TAZQ16635 292 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 TMEM268Q5VZI3 342 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 PLPP6Q8IY26 295 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 RHNO1Q9BSD3 238 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 LHX3Q9UBR4 397 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 BMPR1BO00238 502 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 CHEK1O14757 476 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 ACTL6BO94805 426 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 ZNF43P17038 809 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 PPOXP50336 477 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 ELLP55199 621 aaPredicted RBP12.11□□□□□ -0.47
USP40-208ENST00000450966 YOD1Q5VVQ6 348 aaPredicted RBP12.11□□□□□ -0.47
USP40-208ENST00000450966 MUC20Q8N307 709 aaPredicted RBP12.11□□□□□ -0.47
USP40-208ENST00000450966 ZDHHC22Q8N966 263 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 NUBPLQ8TB37 319 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 IP6K3Q96PC2 410 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 DNAJC4Q9NNZ3 241 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 NGBQ9NPG2 151 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 OR1A1Q9P1Q5 309 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 ZNF337Q9Y3M9 751 aa12.11□□□□□ -0.47
USP40-208ENST00000450966 GPR37O15354 613 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 SLC6A8P48029 635 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 PDE7AQ13946 482 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 TMEM97Q5BJF2 176 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 SLC35D3Q5M8T2 416 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 C12orf54Q6X4T0 127 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 MS4A4EQ96PG1 132 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 C19orf43Q9BQ61 176 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms