RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 IGHV1OR21-1A0A087WYE8 117 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 LINC01387J3KSC0 135 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 LGALS8O00214 317 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 DUX1O43812 170 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 RNF4P78317 190 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 TLE3Q04726 772 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 TAF13Q15543 124 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 TMEM17Q86X19 198 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 KDM8Q8N371 416 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 CLRN3Q8NCR9 226 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 OR5D14Q8NGL3 314 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 OR10K1Q8NGX5 313 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 MRPS24Q96EL2 167 aaKnown RBP10.07□□□□□ -0.8
USP4-205ENST00000431357 VRK1Q99986 396 aaPredicted RBP10.07□□□□□ -0.8
USP4-205ENST00000431357 TMEM185BQ9H7F4 350 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 ZMAT3Q9HA38 289 aaKnown RBP10.07□□□□□ -0.8
USP4-205ENST00000431357 HPF1Q9NWY4 346 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 ZNF230Q9UIE0 474 aaPredicted RBP10.07□□□□□ -0.8
USP4-205ENST00000431357 FBXO4Q9UKT5 387 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 SLC5A6Q9Y289 635 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 C9orf170A2RU37 121 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 SYT7O43581 403 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 CHRM2P08172 466 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 IL11P20809 199 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 OR1D5P58170 312 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 TAS2R31P59538 309 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 QRFPP83859 136 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 FMODQ06828 376 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 ANKRD39Q53RE8 183 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 PRAMEF17Q5VTA0 474 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 C3orf33Q6P1S2 294 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 CD163Q86VB7 1156 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 PRSS58Q8IYP2 241 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 PAQR4Q8N4S7 273 aaPredicted RBP10.07□□□□□ -0.8
USP4-205ENST00000431357 CHST4Q8NCG5 386 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 OR4S1Q8NGB4 309 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 THAP6Q8TBB0 222 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 NKD1Q969G9 470 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 SLAMF6Q96DU3 332 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 C5orf34Q96MH7 638 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 TPSD1Q9BZJ3 242 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 MOB1AQ9H8S9 216 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 ALKBH4Q9NXW9 302 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 MYEF2Q9P2K5 600 aaKnown RBP10.07□□□□□ -0.8
USP4-205ENST00000431357 B3GALT5Q9Y2C3 310 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 KCNK7Q9Y2U2 307 aa10.07□□□□□ -0.8
USP4-205ENST00000431357 LMX1BO60663 402 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 STK17BO94768 372 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 TTRP02766 147 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 FOLR1P15328 257 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 DLSTP36957 453 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 GNALP38405 381 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 RAB13P51153 203 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 IL13RA1P78552 427 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 POU3F1Q03052 451 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 FAM189A2Q15884 450 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 NKPD1Q17RQ9 610 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 RELL2Q8NC24 303 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 CADM4Q8NFZ8 388 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 PPP1R1CQ8WVI7 109 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 C11orf40Q8WZ69 217 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 TGIF2Q9GZN2 237 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 PBOV1Q9GZY1 135 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 CST11Q9H112 138 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 KLHL13Q9P2N7 655 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 SUSD2Q9UGT4 822 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 A0A1W2PNV4 684 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 WIPF3A6NGB9 483 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 VSTM2BA6NLU5 285 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 ETV2O00321 342 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 IFNA6P05013 189 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 CSN2P05814 226 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 VSIG8P0DPA2 414 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 MSX1P28360 303 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 CSNK1EP49674 416 aaKnown RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 PRKXP51817 358 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 NXPH1P58417 271 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 UNC119Q13432 240 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 PPP1R1AQ13522 171 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 THEM4Q5T1C6 240 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 C1orf189Q5VU69 101 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 ZNF529Q6P280 563 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 C17orf107Q6ZR85 190 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 RHOUQ7L0Q8 258 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 OR2W3Q7Z3T1 314 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 DEFB119Q8N690 84 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 INO80EQ8NBZ0 244 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 OR52N4Q8NGI2 321 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 OR10R2Q8NGX6 335 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 ELP5Q8TE02 316 aa10.06□□□□□ -0.8
USP4-205ENST00000431357 ZNF471Q9BX82 626 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 SAV1Q9H4B6 383 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 RPH3AQ9Y2J0 694 aaPredicted RBP10.06□□□□□ -0.8
USP4-205ENST00000431357 IGKV1D-43A0A0B4J1Z2 117 aa10.05□□□□□ -0.8
USP4-205ENST00000431357 RNF222A6NCQ9 220 aa10.05□□□□□ -0.8
USP4-205ENST00000431357 LIPT2A6NK58 231 aa10.05□□□□□ -0.8
USP4-205ENST00000431357 TMEM14DPA8MWL7 114 aa10.05□□□□□ -0.8
USP4-205ENST00000431357 DUS4LO95620 317 aaKnown RBP10.05□□□□□ -0.8
USP4-205ENST00000431357 CNR1P21554 472 aa10.05□□□□□ -0.8
USP4-205ENST00000431357 LAP3P28838 519 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms