RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TLE4Q04727 773 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 PMS2P3Q13401 168 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 C1DQ13901 141 aaKnown RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 TRAM2Q15035 370 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF74Q16587 644 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 EXOC3L2Q2M3D2 409 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 MS4A18Q3C1V0 323 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ANKDD1AQ495B1 522 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 NHLRC1Q6VVB1 395 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 Q6ZT83 130 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ABHD12BQ7Z5M8 362 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 VTCN1Q7Z7D3 282 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 P2RY8Q86VZ1 359 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 HEATR5AQ86XA9 2040 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 NKAIN4Q8IVV8 208 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 CDK20Q8IZL9 346 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 OFCC1Q8IZS5 231 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 C10orf53Q8N6V4 93 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 RNF148Q8N7C7 305 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 OR5J2Q8NH18 312 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 LINC01560Q8TB33 94 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 TMEM239Q8WW34 195 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 HSD17B8Q92506 261 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 SGTBQ96EQ0 304 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 PYURFQ96I23 114 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 WFIKKN1Q96NZ8 548 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 LINC00470Q9BZP3 86 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 DENND2DQ9H6A0 471 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 FKRPQ9H9S5 495 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 SDF2L1Q9HCN8 221 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 NGBQ9NPG2 151 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 NANSQ9NR45 359 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF226Q9NYT6 803 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 TAS2R1Q9NYW7 299 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 C6orf203Q9P0P8 240 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ACTR3BQ9P1U1 418 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF229Q9UJW7 825 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 SLC7A7Q9UM01 511 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 MED31Q9Y3C7 131 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 OR2W1Q9Y3N9 320 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 MAGED1Q9Y5V3 778 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 USP9XQ93008 2570 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 SPTBN1Q01082 2364 aaKnown RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ASPMQ8IZT6 3477 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PRQ8 180 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CIB4A0PJX0 185 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF726A6NNF4 738 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 PDLIM1O00151 329 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 UBE2CO00762 179 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 PLPP3O14495 311 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 FFAR1O14842 300 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ARPC2O15144 300 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 GYG2O15488 501 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CTAG2O75638 210 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 OR7A10O76100 309 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 STAMBPO95630 424 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 H1F0P07305 194 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ASAH2BP0C7U1 165 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ADORA3P0DMS8 318 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 NQO1P15559 274 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TCN1P20061 433 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 COX5AP20674 150 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CRYGSP22914 178 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 IGHV1-2P23083 117 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 IL32P24001 234 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 UGT2B15P54855 530 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CLDN17P56750 224 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TGFBR3Q03167 851 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 PRKCDQ05655 676 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ARL16Q0P5N6 197 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TRAP1Q12931 704 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 BNIP1Q12981 228 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 DGCR6Q14129 220 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 STK11Q15831 433 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 IQCCQ4KMZ1 466 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 DNAL1Q4LDG9 190 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TIMM23BQ5SRD1 257 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TSPO2Q5TGU0 170 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 OR7E24Q6IFN5 339 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CASP12Q6UXS9 341 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 WDR88Q6ZMY6 472 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 C9orf139Q6ZV77 190 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TUBA1AQ71U36 451 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 BHLHA15Q7RTS1 189 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 PIWIL3Q7Z3Z3 882 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TSEN54Q7Z6J9 526 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 DHFR2Q86XF0 187 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 C1orf87Q8N0U7 546 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 UBE2J2Q8N2K1 259 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CIARTQ8N365 385 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 KDM8Q8N371 416 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF433Q8N7K0 673 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 POC1AQ8NBT0 407 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 OR5R1Q8NH85 324 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ACOT11Q8WXI4 607 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MCUR1Q96AQ8 359 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MUCL1Q96DR8 90 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 DNAJA3Q96EY1 480 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 C7orf34Q96L11 122 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 LRR1Q96L50 414 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms