RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 OCEL1Q9H607 264 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 METTL17Q9H7H0 456 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GPR173Q9NS66 373 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GAB2Q9UQC2 676 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SIGLEC1Q9BZZ2 1709 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 F5H697 171 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GABRB3P28472 473 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OPRL1P41146 370 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OTUD1Q5VV17 481 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GDF7Q7Z4P5 450 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PIANPQ8IYJ0 282 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 FBXO17Q96EF6 278 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 AK3Q9UIJ7 227 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 COA3Q9Y2R0 106 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ADAM12O43184 909 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 HRO43593 1189 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 RBP4P02753 201 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 RPA2P15927 270 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 CD22P20273 847 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 FPR3P25089 353 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SPNS3Q6ZMD2 512 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 FA2HQ7L5A8 372 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SSX8Q7RTT4 187 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SLC38A6Q8IZM9 456 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PLPP7Q8NBV4 271 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 FBXO27Q8NI29 283 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ELF4Q99607 663 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 S1PR5Q9H228 398 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ASIC5Q9NY37 505 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 CASP8AP2Q9UKL3 1982 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM30CPA0ZSE6 113 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 G3V3Q6 166 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZGLP1P0C6A0 271 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SDHAP31040 664 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 OXA1LQ15070 435 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 STUMQ69YW2 141 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PET117Q6UWS5 81 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 APOBEC3DQ96AK3 386 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ASB16Q96NS5 453 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 OSGIN1Q9UJX0 560 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PPIL1Q9Y3C6 166 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 USP3Q9Y6I4 520 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PRSS21Q9Y6M0 314 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PPP1R2P9O14990 202 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FABP7O15540 132 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 TNFSF8P32971 234 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 C18orf63Q68DL7 685 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PARM1Q6UWI2 310 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SIAH1Q8IUQ4 282 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 C11orf42Q8N5U0 333 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 KLHDC1Q8N7A1 406 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF740Q8NDX6 193 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 TTC9Q92623 222 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 LRFN3Q9BTN0 628 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PCED1AQ9H1Q7 454 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 OR5V1Q9UGF6 321 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 A0A096LPE4 126 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 A0A1W2PPZ6 126 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF724A8MTY0 619 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SDCBPO00560 298 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PIAS2O75928 621 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 GUSBP08236 651 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 TRAPPC2P0DI81 140 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 TRAPPC2BP0DI82 140 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 BMP5P22003 454 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZBTB25P24278 435 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 AKR1C3P42330 323 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FUT6P51993 359 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PCBP4P57723 403 aaKnown RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 HTRA3P83110 453 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PLAC9Q5JTB6 97 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 B3GNT8Q7Z7M8 397 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 GPBAR1Q8TDU6 330 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 TM4SF18Q96CE8 201 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 DIRC2Q96SL1 478 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 DDX60LQ5H9U9 1706 aaKnown RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF195O14628 629 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 CRXO43186 299 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SPRY3O43610 288 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 WDR1O75083 606 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FGF2P09038 288 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FGF7P21781 194 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PTGER1P34995 402 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 RANP62826 216 aaKnown RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 LSAMPQ13449 338 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 KCNAB1Q14722 419 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 HYAL4Q2M3T9 481 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 NOL4LQ96MY1 436 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 GMLQ99445 158 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 CYSLTR2Q9NS75 346 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF391Q9UJN7 358 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 NSG2Q9Y328 171 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 RGPD3A6NKT7 1758 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 C4AP0C0L4 1744 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FAM24AA6NFZ4 105 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 HTR6P50406 440 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 IZUMO4Q1ZYL8 232 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF789Q5FWF6 425 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SLC51BQ86UW2 128 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 OR52L2PQ8NGH6 319 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms