RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 VHLLQ6RSH7 139 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 PLEKHG7Q6ZR37 379 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 PRSS45Q7RTY3 260 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 LHFPL3Q86UP9 236 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 C1orf174Q8IYL3 243 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 ZNF786Q8N393 782 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 SNX33Q8WV41 574 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 ALG8Q9BVK2 526 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 POFUT1Q9H488 388 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 PAK1IP1Q9NWT1 392 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-202ENST00000422991 FAM206AQ9NX38 181 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 STARD10Q9Y365 291 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 EXOSC1Q9Y3B2 195 aaKnown RBP14.62□□□□□ -0.07
COL7A1-202ENST00000422991 LRRC42Q9Y546 428 aa14.62□□□□□ -0.07
COL7A1-202ENST00000422991 AKAP6Q13023 2319 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 C5orf63A6NC05 138 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 H3BSA7 217 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 LCATP04180 440 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 ANXA2P07355 339 aaKnown RBP14.61□□□□□ -0.07
COL7A1-202ENST00000422991 ETV1P50549 477 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 KRTAP10-9P60411 292 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 SLC35A2P78381 396 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 MVKQ03426 396 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 ZNF829Q3KNS6 432 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-202ENST00000422991 SNAI3Q3KNW1 292 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 SPATA46Q5T0L3 261 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 RGS7BPQ6MZT1 257 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-202ENST00000422991 FAM220AQ7Z4H9 259 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 STX19Q8N4C7 294 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 ZNF611Q8N823 705 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 YIPF7Q8N8F6 280 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 MRPL48Q96GC5 212 aaKnown RBP14.61□□□□□ -0.07
COL7A1-202ENST00000422991 MARS2Q96GW9 593 aaKnown RBP14.61□□□□□ -0.07
COL7A1-202ENST00000422991 COG8Q96MW5 612 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 MYCBPQ99417 103 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-202ENST00000422991 DUSP21Q9H596 190 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 ACOXLQ9NUZ1 547 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 GNG8Q9UK08 70 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 TPRKBQ9Y3C4 175 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 CMAHPQ9Y471 501 aa14.61□□□□□ -0.07
COL7A1-202ENST00000422991 CSMD1Q96PZ7 3565 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 SPG11Q96JI7 2443 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 PTGES3LE9PB15 166 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 CDK1P06493 297 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 ZNF250P15622 560 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 MYL12AP19105 171 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 TUBG1P23258 451 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 APOBEC3AP31941 199 aaPredicted RBP14.6□□□□□ -0.07
COL7A1-202ENST00000422991 FABP6P51161 128 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 OR12D2P58182 307 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 MFGE8Q08431 387 aaPredicted RBP14.6□□□□□ -0.07
COL7A1-202ENST00000422991 LIPNQ5VXI9 398 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 FAM57BQ71RH2 274 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 KCTD20Q7Z5Y7 419 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 SYS1Q8N2H4 156 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 OR5L1Q8NGL2 311 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 SLC25A40Q8TBP6 338 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 SGCDQ92629 289 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 MYDGFQ969H8 173 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 MRPL24Q96A35 216 aaKnown RBP14.6□□□□□ -0.07
COL7A1-202ENST00000422991 C4orf36Q96KX1 117 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 LURAP1Q96LR2 239 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 SIGLEC11Q96RL6 698 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 OR2J1Q9GZK6 312 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 SP140LQ9H930 580 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 TUBG2Q9NRH3 451 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 BLOC1S6Q9UL45 172 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 R4GMQ9 66 aa14.6□□□□□ -0.07
COL7A1-202ENST00000422991 PDZD2O15018 2839 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 TMEM269A0A1B0GVZ9 245 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 ACOD1A6NK06 481 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 PNPP00491 289 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 OR4A8P0C604 315 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 DANCRP0C864 163 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 C21orf33P30042 268 aaPredicted RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 TTKP33981 857 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 SERPINF1P36955 418 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 MMP16P51512 607 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 MBNL2Q5VZF2 373 aaKnown RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 C20orf204Q6ZNR8 217 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 EGFL6Q8IUX8 553 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 FBXL14Q8N1E6 418 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 OR8B12Q8NGG6 310 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 OR52H1Q8NGJ2 320 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 KLF14Q8TD94 323 aaPredicted RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 RNF166Q96A37 237 aaPredicted RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 MRPL37Q9BZE1 423 aaKnown RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 MOB1AQ9H8S9 216 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 ISG20L2Q9H9L3 353 aaKnown RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 BRD7Q9NPI1 651 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 FAIMQ9NVQ4 179 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 PTTG3PQ9NZH4 202 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 ZNF319Q9P2F9 582 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 CLEC2DQ9UHP7 191 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 FZR1Q9UM11 496 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 CAB39Q9Y376 341 aaPredicted RBP14.59□□□□□ -0.07
COL7A1-202ENST00000422991 N6AMT1Q9Y5N5 214 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 CSMD2Q7Z408 3487 aa14.59□□□□□ -0.07
COL7A1-202ENST00000422991 IGLV3-9A0A075B6K5 115 aa14.58□□□□□ -0.08
COL7A1-202ENST00000422991 LOC110117498-PIK3R3F6TDL0 507 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms