RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 UMAD1C9J7I0 102 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 NME2P1O60361 137 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 UTS2O95399 124 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 NPY4RP50391 375 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 CARD18P57730 90 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 MLF1P58340 268 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 TAS2R19P59542 299 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 MPPED2Q15777 294 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 TMEM41BQ5BJD5 291 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 GABRG1Q8N1C3 465 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 SYS1Q8N2H4 156 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 FAM181AQ8N9Y4 354 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 TOMM40LQ969M1 308 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 LPAR4Q99677 370 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 PDE7BQ9NP56 450 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 HHLA2Q9UM44 414 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 RHBDD3Q9Y3P4 386 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 ENTPD2Q9Y5L3 495 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 M0R143 59 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 PIN1P1O15428 100 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 DFFBO76075 338 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 AMY2BP19961 511 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 DDTP30046 118 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 RAB38P57729 211 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 VWA2Q5GFL6 755 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 DMRTA1Q5VZB9 504 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 HAS2Q92819 552 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 MIB2Q96AX9 1013 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 DNAJB12Q9NXW2 375 aaKnown RBP10.78□□□□□ -0.68
HMGB1-206ENST00000405805 B9D1Q9UPM9 204 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 KLHDC2Q9Y2U9 406 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 SCN8AQ9UQD0 1980 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 METTL12A8MUP2 240 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 GPR37O15354 613 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 HCRTR1O43613 425 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 SUSD5O60279 629 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 HLA-DQB1P01920 261 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 MYF5P13349 255 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 FGF7P21781 194 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 CTHP32929 405 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 PSG6Q00889 435 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 RASGEF1BQ0VAM2 473 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 SURF2Q15527 256 aaPredicted RBP10.77□□□□□ -0.68
HMGB1-206ENST00000405805 ABHD12BQ7Z5M8 362 aaPredicted RBP10.77□□□□□ -0.68
HMGB1-206ENST00000405805 BATF2Q8N1L9 274 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 CLCC1Q96S66 551 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 RHOFQ9HBH0 211 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 SPTBN2O15020 2390 aa10.77□□□□□ -0.68
HMGB1-206ENST00000405805 SDCBPO00560 298 aaPredicted RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 OR4E1P0C645 316 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 PNMTP11086 282 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 TLE3Q04726 772 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 TGIF1Q15583 401 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ELAVL1Q15717 326 aaKnown RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ACKR1Q16570 336 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 SLC2A12Q8TD20 617 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 PPP1R1CQ8WVI7 109 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 CCDC74AQ96AQ1 378 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 APMAPQ9HDC9 416 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 MED9Q9NWA0 146 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 MED29Q9NX70 200 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 FRRS1LQ9P0K9 344 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ST6GALNAC2Q9UJ37 374 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 TMEM212A6NML5 194 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 F5H5K5 113 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 SFTA3P0C7M3 94 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 THBS2P35442 1172 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ZP1P60852 638 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 CTAG1AP78358 180 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 PRICKLE4Q2TBC4 344 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 GGNBP1Q5YKI7 109 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF385CQ66K41 422 aaPredicted RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 SLC22A25Q6T423 547 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 CHRDL2Q6WN34 429 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 GVQW1Q8N7I0 195 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 STACQ99469 402 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 SLC17A4Q9Y2C5 497 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 MBTPS2O43462 519 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 GABRA1P14867 456 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 PGCP20142 388 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 RBMXP38159 391 aaKnown RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 NPBWR1P48145 328 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 BLKP51451 505 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 EMP2P54851 167 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF239Q16600 458 aaKnown RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 WDR38Q5JTN6 314 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 DCXRQ7Z4W1 244 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 LDLRAD3Q86YD5 345 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 OR6N1Q8NGY5 312 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 FAM213BQ8TBF2 198 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 MARVELD3Q96A59 401 aa10.77□□□□□ -0.69
HMGB1-206ENST00000405805 MRM2Q9UI43 246 aaKnown RBP10.77□□□□□ -0.69
HMGB1-206ENST00000405805 ZDBF2Q9HCK1 2354 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 NDUFB6O95139 128 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 CALCBP10092 127 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 BTCP35070 178 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 TSFMP43897 325 aaKnown RBP10.76□□□□□ -0.69
HMGB1-206ENST00000405805 FXYD4P59646 89 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 NPEPL1Q8NDH3 523 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms