RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 AKAP1Q92667 903 aaKnown RBP eCLIP16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF416Q9BWM5 594 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 GPR35Q9HC97 309 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 PLSCR2Q9NRY7 297 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 TMEM269A0A1B0GVZ9 245 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 A0A1W2PPK0 400 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 CST2P09228 141 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 UBCP0CG48 685 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 SCRN3Q0VDG4 424 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 WDR38Q5JTN6 314 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 TMEM244Q5VVB8 128 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 OTPQ5XKR4 325 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 STAC2Q6ZMT1 411 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 SYT9Q86SS6 491 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 TUSC5Q8IXB3 177 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF100Q8IYN0 542 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 DEDD2Q8WXF8 326 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 S100A16Q96FQ6 103 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 TP63Q9H3D4 680 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 CALHM2Q9HA72 323 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 TMEM38BQ9NVV0 291 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 UPB1Q9UBR1 384 aa16.02■□□□□ 0.16
CCDC88C-203ENST00000389856 TNRC6AQ8NDV7 1962 aaKnown RBP16.02■□□□□ 0.15
CCDC88C-203ENST00000389856 C7orf66A4D0T2 115 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 ACOD1A6NK06 481 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 LANCL1O43813 399 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 CD2P06729 351 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 PSMA6P60900 246 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 ECH1Q13011 328 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 CDK10Q15131 360 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 C3AR1Q16581 482 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 SIAH3Q8IW03 269 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 HSD17B8Q92506 261 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 NABP1Q96AH0 204 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 GMPPAQ96IJ6 420 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 RNF170Q96K19 258 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 ALKBH3Q96Q83 286 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 FOXB1Q99853 325 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 OR52A1Q9UKL2 312 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 EMC9Q9Y3B6 208 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 ZNF407Q9C0G0 2248 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 AHRRA9YTQ3 701 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 GABARAPH6UMI1 98 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 RPL36A-HNRNPH2H7BZ11 118 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 C1QBP02746 253 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 ACHEP22303 614 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 NKX2-5P52952 324 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 IFITM2Q01629 132 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 MAB21L1Q13394 359 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 TBR1Q16650 682 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 CEACAM16Q2WEN9 425 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 OR2A2Q6IF42 318 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 CFAP77Q6ZQR2 320 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 KRT74Q7RTS7 529 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 CMTM4Q8IZR5 234 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 PRSS35Q8N3Z0 413 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 TSEN15Q8WW01 171 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 GFI1Q99684 422 aa16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 RANGRFQ9HD47 186 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-203ENST00000389856 DNAJC13O75165 2243 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 ISG15P05161 165 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 GSTT2BP0CG30 244 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 BTCP35070 178 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 KIR3DL2P43630 455 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 ENDOGQ14249 297 aaKnown RBP16■□□□□ 0.15
CCDC88C-203ENST00000389856 FAM180AQ6UWF9 173 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 LRRTM1Q86UE6 522 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 ZNF433Q8N7K0 673 aaPredicted RBP16■□□□□ 0.15
CCDC88C-203ENST00000389856 RBMXL3Q8N7X1 1067 aaKnown RBP16■□□□□ 0.15
CCDC88C-203ENST00000389856 SPTSSAQ969W0 71 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 SLA2Q9H6Q3 261 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 HHLA2Q9UM44 414 aa16■□□□□ 0.15
CCDC88C-203ENST00000389856 SRSF10O75494 262 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 ID4P47928 161 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 ART1P52961 327 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 HIST1H3AP68431 136 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 DGCR2P98153 550 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 KLF9Q13886 244 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 KRTCAP3Q53RY4 240 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 ELFN2Q5R3F8 820 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 HIST2H3PS2Q5TEC6 136 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 TSPO2Q5TGU0 170 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 HIST2H3AQ71DI3 136 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 DPPA2Q7Z7J5 298 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 LRRC18Q8N456 261 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 SLC22A24Q8N4F4 322 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 HAVCR1Q96D42 359 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 ABHD17AQ96GS6 310 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 ZFP3Q96NJ6 502 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 TAAR6Q96RI8 345 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 CKLFQ9UBR5 152 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 DHDHQ9UQ10 334 aa15.99■□□□□ 0.15
CCDC88C-203ENST00000389856 ANXA2P2A6NMY6 339 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 RER1O15258 196 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 SS18L1O75177 396 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 TCRBP04435 133 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 ANXA2P07355 339 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 ADRB1P08588 477 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 S100A1P23297 94 aa15.98■□□□□ 0.15
CCDC88C-203ENST00000389856 CTSSP25774 331 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms